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Detailed information on CNT30443502


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71V89|H33_GOSHI, E-value = 8e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Aegilops tauschiiOryza sativa46.3765.8382.23287forward
CNT30519871Aegilops tauschiiSetaria italica52.1848.7989.78323forward
CNT30315797Aegilops tauschiiCorylus avellana45.7242.8181.27283forward
CNT30700039Aegilops tauschiiQuercus lobata46.258.4981.12286forward
CNT3069242Aegilops tauschiiQuercus suber37.6443.4784.55233forward
CNT30200358Aegilops tauschiiPisum sativum46.6946.4681.66289forward
CNT30184957Aegilops tauschiiSecale cereale51.0555.9391.46316forward
CNT30304662Aegilops tauschiiTriticum aestivum54.9366.0296.47340forward
CNT30219843Aegilops tauschiiHordeum vulgare50.7354.791.08314forward
CNT30398097Aegilops tauschiiTriticum turgidum54.9344.4490340forward
CNT30565750Aegilops tauschiiActinidia chinensis48.6327.3982.06301forward
CNT30255419Aegilops tauschiiAvena sativa54.9363.7994.71340forward
CNT30474628Aegilops tauschiiSaccharum spontaneum50.8926.4991.43315forward
CNT30141675Aegilops tauschiiLolium perenne55.0938.1994.13341forward
CNT306284Aegilops tauschiiZea mays37.32107.9483.98231forward
CNT30622400Aegilops tauschiiCajanus cajan47.3332.0287.71293forward
CNT30596421Aegilops tauschiiOryza meridionalis21.4918.9595.49133forward
CNT30148402Aegilops tauschiiBrachypodium distachyon26.9834.0192.22167forward
CNT30114434Aegilops tauschiiEutrema salsugineum16.826.1386.54104forward

Expression of CNT30443502

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRRRRRQGLDWPRSLRRAPRGCGGRAGCPWA*

>peptide 2 (40 aa)
MHISTREANQLLQMLANVGMRPRMPNAATTAAGAGLASLA*

>peptide 3 (89 aa)
MRRASWMSLGMMVTRLAWMAHRLVSSNSPTRYASAASWRASTAWDWKRRSVLKSCAISRTRRWNGSLRMRSSVLFWYFLISRSATVPGL*

Sequence

>CNT30443502
CGATAATTGTCAATCAACGCTGTATTAACCAACAATTTCATCACAGTAAGCATCGGTTTGCATCACCGCAAACCAAAACAAATTAAGCAGGCAAGAGCCT
TTGTAACTACGGTAACCAACCAACATGGTTTTCTACAACGATCCACAAGATGCATATCTCGACAAGGGAGGCTAATCAACTACTACAAATGCTGGCGAAC
GTTGGAATGCGCCCCCGAATGCCGAATGCGGCGACGACGGCGGCAGGGGCTGGATTGGCCTCGCTCGCTTAGGCGCGCTCCCCGCGGATGCGGCGGGCGA
GCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGCCCGACGAGGTACGCCTCGGCCGCCTCCTG
GAGGGCCAGCACGGCGTGGGACTGGAAGCGGAGGTCCGTCTTGAAGTCCTGCGCGATCTCGCGGACCAGGCGCTGGAACGGCAGCTTGCGGATGAGGAGC
TCGGTGCTCTTCTGGTACTTCCTGATCTCGCGGAGCGCGACGGTCCCGGGCCTGTAGCGGTGGGGCTTCTTCACTCCGCCGGTGGTCGGCGCCGACTTCC
TCGCCGCCTGAAATCACAC