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Detailed information on CNT3044343


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 7e-81

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-116

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513318Prunus dulcisJuglans regia77.7867.3287.17686forward
CNT30710308Prunus dulcisGlycine max73.0269.788.04644forward
CNT30562217Prunus dulcisActinidia chinensis77.4467.8385.8683forward
CNT30311067Prunus dulcisCamelina sativa77.4454.0885.21683forward
CNT30608646Prunus dulcisGossypium raimondii76.7667.585.82677forward
CNT30603673Prunus dulcisOryza punctata74.666.5387.69658forward
CNT3051148Prunus dulcisCucumis sativus77.5557.3385.23684forward

Expression of CNT3044343

Peptides detected in this lncRNA

>peptide 1 (34 aa)
EIITQEQIYLLNKKYQETKLDKCLPKRQRQYHET*

>peptide 2 (40 aa)
MVSELSTSKVIVFPVRVFTKICIPPRRRSTKCRVDSFWML*

>peptide 3 (40 aa)
MVSELSTSRVMVLPVRVLTKICIPPRRRSTKWRVDSFWML*

>peptide 4 (42 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVMVLPVRVFTKIC

Sequence

>CNT3044343
GAAATTATTACTCAAGAACAAATTTATTTATTAAACAAAAAGTACCAGGAAACCAAACTAGATAAATGCCTCCCCAAGAGGCAGAGACAGTACCATGAAA
CTTGAAACTTAAAAATAAAAAACTTAAAAACATTGTTTTAAGGGAACCACAGAAACATTCATTAAAAGCAGGGTGACACCAGAGACTTCCACTTCCTAGA
AACCACCACGGAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCAGCCAAAGTACGGCCGTCCTCCAGCTGCTTCCCTGCAAAGAT
CAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCCGAGCTCTCGACCTCCAAAGTGATAGTCTTT
CCGGTCAGGGTCTTCACGAAGATCTGCATACCACCACGGAGACGAAGCACCAAATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGC
CATCCTCCACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAG
CTTTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATACCACCACGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTCT
GGATGTTGTAGTCTGCGAGGGTACGGCCGTCCTCTAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTT
AGCCTTGACGTTGTCGATGGTATCAGATGACTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGAGTTTTCACGAAGATTTGC