Detailed information on CNT30443283


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71V89|H33_GOSHI, E-value = 5e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30279437Aegilops tauschiiChenopodium quinoa26.7121.4184.15164forward
CNT3069241Aegilops tauschiiQuercus suber47.3966.1482.13291forward
CNT30613891Aegilops tauschiiArabis alpina17.126.0584.76105forward
CNT30609694Aegilops tauschiiGossypium raimondii20.8516.7182.81128forward
CNT30358858Aegilops tauschiiLactuca sativa22.3123.782.48137forward
CNT30414942Aegilops tauschiiPapaver somniferum23.2917.5980.42143forward
CNT30644610Aegilops tauschiiCannabis sativa18.2424.3583.93112forward

Expression of CNT30443283

Peptides detected in this lncRNA

>peptide 1 (52 aa)
HKSRYNTTMGGHDNNRVAANNNGSEVFDIDIRLLHRKPKGTSHIKLVRLTHI*

>peptide 2 (29 aa)
TTNQDTIPRWEGTTTTELQLTTMVLRSST*

>peptide 3 (79 aa)
MMVTRLAWMAHRLVSSNSPTRYASAASWRASTAWDWKRRSVLKSCAISRTRRWNGSLRMRSSVLFWYFLISRSATVPGL*

Sequence

>CNT30443283
ACCACAAATCAAGATACAATACCACGATGGGAGGGCACGACAACAACAGAGTTGCAGCTAACAACAATGGTTCTGAGGTCTTCGACATAGACATACGTTT
GCTTCATCGCAAACCAAAAGGAACATCACATATCAAGTTGGTTCGTCTTACTCATATCTAACAACCATATTTCTTCTACACAAAAGCTTAGACCTAGAAC
AGCAATTAGGAACAAACTACAACCGGAATCAACTCATCCCGATCCACTACCGTCGTTCACGGAGAGGACAGCTTAGGCATGATGGTGACGCGCTTGGCGT
GGATGGCGCACAGGTTGGTGTCCTCGAACAGCCCGACGAGGTACGCCTCGGCCGCCTCCTGGAGGGCCAGCACGGCGTGGGACTGGAAGCGGAGGTCCGT
CTTGAAGTCCTGCGCGATCTCGCGGACCAGGCGCTGGAACGGCAGCTTGCGGATGAGGAGCTCGGTGCTCTTCTGGTACTTCCTGATCTCGCGGAGCGCG
ACGGTCCCGGGCCTGTAGCGGTGGGGCTTCTTCACTCCGCCGGTGGTCGGCGCCGACTTCCTCGCCGCCTGAAATCACACAGCAATTCAAATCAGATCGT
CAGTCAGCAAATCT