Detailed information on CNT30443231


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 3e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727261Aegilops tauschiiCorchorus capsularis28.4421.981.15122forward
CNT3017683Aegilops tauschiiZea mays22.1419.1590.5395forward
CNT3022241Aegilops tauschiiPopulus trichocarpa24.941185.05107forward
CNT30579791Aegilops tauschiiEchinochloa crusgalli48.9516.6783.81210forward
CNT3063260Aegilops tauschiiSelaginella moellendorffii20.5123.4784.0988forward

Expression of CNT30443231

Peptides detected in this lncRNA

>peptide 1 (43 aa)
DIRETAHHVRTFYVAEGIMDRTTLPMAGLVVVAGDGAVVVAHV*

>peptide 2 (77 aa)
MLVKSPLATAGPKERAGFMDPPEKGPATRMLAPTMKPMAMGAMVPRDPFLGSAAVAYTVRWSPAWWLRMAEKRKWEDE

>peptide 3 (29 aa)
ETFVRLPTTYALFMLPKALWTERLFPWLA*

Sequence

>CNT30443231
GAGACATTCGTGAGACTGCCCACCACGTACGCACTTTTTATGTTGCCGAAGGCATTATGGACCGAACGACTCTTCCCATGGCTGGCTTAGTAGTCGTTGC
CGGCGACGGGGCTGTGGTCGTCGCACATGTATAGGTATCGGTAGACGACGCCGGCGAGGCCACCGCCGATGAGCGGGCCGGCCCAGTAGACCCAGATGTT
GGTGAAGTCGCCGCTGGCAACGGCGGGGCCGAAGGAGCGTGCAGGGTTCATGGACCCGCCGGAGAAGGGGCCGGCCACGAGGATGTTGGCGCCGACGATG
AAGCCGATGGCGATGGGGGCGATGGTGCCGAGGGATCCCTTCTTGGGGTCGGCGGCGGTGGCGTACACGGTGCGATGGAGCCCGGCATGGTGGCTTAGAA
TGGCCGAGAAAAGGAAGTGGGAGGATGAG