Detailed information on CNT3044322


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516020Prunus dulcisJuglans regia5.3723.539060reverse complement
CNT30286472Prunus dulcisTriticum aestivum5.4626.0793.4461reverse complement

Expression of CNT3044322

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MDNCMELGILDSPIEIALMAIFSTTLLLNSQNFCVFSFCAH*

>peptide 2 (41 aa)
DTRTFLLFPLSMNFYILNAENGLLLFFFIYLFFPLKKKEKL*

>peptide 3 (46 aa)
MSSQAVVAAARLSFVLGLFAILALVWAYCLLGFKLVADSFAFDLSL*

>peptide 4 (76 aa)
MPRVRAFALAQMPAPPPYTMLVFVWFLYLFWCFVSFDLGGDDLHVGLFFFFWGFFFSCICLCNMSDFKVFWWICGL*

>peptide 5 (57 aa)
MIFMWGFFFFFGVFFFLVYVYVICQILRYFGGFVVYEEAGAAVAAESSTGTWTTVWS*

>peptide 6 (48 aa)
YSYFSPFSFKYELLHPKRRKWSPSFFLYLFIFSIKKKREALEREAPPL*

Sequence

>CNT3044322
GATACTCGTACTTTTCTCCTTTTTCCTTTAAGTATGAACTTCTACATCCTAAACGCCGAAAATGGTCTCCTTCTTTTTTTCTTTATTTATTTATTTTTTC
CATTAAAAAAAAAAGAGAAGCTTTAGAGAGAGAGGCTCCTCCTCTCTAAAAATTTTCTCATCTTCATCACCCTCTTTTGAGCAGCTGGTGGCTCTCCCAC
CGCCCTTGGGAGTGGCTCCTCAGCCACCTTTGGTGGCTCTCCCACTGCCCTATTCAGTTGTCCCTTCTTCCATCCCTTTCCTTTTATCTCCCCCACCTAC
TCCATTCAAATCCTTTCTCTATGGTCTTGGTATTGTCCCTTCCCACTGAAATTTTATTATTCTTATTGATTTGGCTTCATCTTGTGGCTGCTTCGACTAG
CTAGAAACGCGTTTTCTCGCTTACAACTTTGAAGATGCCTAGAGTTCGAGCTTTTGCTCTTGCTCAGATGCCTGCACCACCTCCTTATACTATGTTGGTA
TTTGTTTGGTTTTTATATTTGTTTTGGTGCTTTGTCAGTTTTGATTTGGGAGGTGATGATCTTCATGTGGGGCTTTTTTTTTTTTTTTGGGGTTTTTTTT
TTTCTTGTATATGTTTATGTAATATGTCAGATTTTAAGGTATTTTGGTGGATTTGTGGTTTATGAAGAAGCAGGGGCAGCGGTAGCTGCTGAATCTTCTA
CTGGTACATGGACAACTGTATGGAGTTAGGCATTTTGGATTCCCCTATTGAAATTGCCCTTATGGCTATATTTTCTACTACTCTGCTCTTGAATTCTCAA
AACTTCTGCGTTTTTTCGTTTTGTGCCCATTAGGTGTGGCAGCTCATCCCCTCAACTTGTCGCGGTGATGTCGTCTCAGGCGGTGGTAGCGGCGGCTCGG
CTGAGTTTTGTTTTGGGTTTGTTTGCTATCTTAGCCTTGGTTTGGGCTTATTGCCTTTTGGGCTTTAAGCTTGTTGCTGATTCTTTTGCATTTGATTTGA
GCCTCTGACCTTTTTGCTTTGTTGTTGAGCTCAATTAGTTGGGTCTGACTTTTATATTGTATTGTTGTGCCCTTTTGTGGATTTCTAATGAAATCTACTT
CCGACCGAAAAAAGAAG