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Detailed information on CNT30442977


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695362Aegilops tauschiiOryza sativa13.2222.7196.7762reverse complement
CNT30677986Aegilops tauschiiSetaria viridis14.2921.4194.0367forward
CNT30533222Aegilops tauschiiEucalyptus grandis14.2920.6297.0167forward
CNT30317675Aegilops tauschiiCorylus avellana13.6523.7995.3164forward
CNT30506280Aegilops tauschiiNicotiana attenuata14.2922.7195.5267forward
CNT30191267Aegilops tauschiiSecale cereale24.0933.2492.92113forward
CNT30227210Aegilops tauschiiHordeum vulgare60.5562.9790.85284forward
CNT30399552Aegilops tauschiiTriticum turgidum60.7744.8194.04285forward
CNT30256571Aegilops tauschiiAvena sativa20.916.0494.998forward
CNT30467175Aegilops tauschiiSaccharum spontaneum13.2226.598.3962forward
CNT30137004Aegilops tauschiiLolium perenne14.9329.9192.8670forward
CNT3067939Aegilops tauschiiLeersia perrieri14.523.6197.0668reverse complement
CNT30723054Aegilops tauschiiTriticum spelta59.2855.9499.64278forward
CNT30572709Aegilops tauschiiVitis vinifera14.9323.6595.7170forward
CNT30704991Aegilops tauschiiPrunus avium14.522.0195.5968forward
CNT3024248Aegilops tauschiiPopulus trichocarpa14.292194.0367forward

Expression of CNT30442977

Peptides detected in this lncRNA

>peptide 1 (84 aa)
SRRLALVPPVAAAAAMGRATLAGPGWNARCRPTTPAAAAMAMAGHVLSRVTLDRLMYRMGLVEEEAHEEAEEEAPKDEAAIQVG*

>peptide 2 (67 aa)
ISPSRARAPRCCCGCDGASDSSRSGMEREVPPDDACGGGDGDGGACFVSCDLRSIDVSYGLSGRRSA*

>peptide 3 (61 aa)
MEVVMACCSLQCVSFAAADCRRTCLAFWRHSSHLSTSLIPETCTLVGLLSMLLVVSGVLLS*

Sequence

>CNT30442977
GATCTCGCCGTCTCGCGCTCGTGCCCCCCGTTGCTGCTGCGGCTGCGATGGGGCGAGCGACTCTAGCCGGTCCGGGATGGAACGCGAGGTGCCGCCCGAC
GACGCCTGCGGCGGCGGCGATGGCGATGGCGGGGCATGTTTTGTCTCGTGTGACCTTAGATCGATTGATGTATCGTATGGGCTTAGTGGAAGAAGAAGCG
CATGAGGAGGCTGAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGCTGATGGAGGTGGTGATGGCGTGCTGTAGCTTGCAATGTGTGTCTTT
CGCTGCGGCTGACTGCAGGCGTACTTGCTTGGCATTTTGGCGCCATTCTTCTCATCTGTCAACTTCGCTTATTCCAGAAACCTGCACTTTAGTAGGCCTG
TTATCGATGCTTTTAGTTGTATCAGGAGTTTTGCTATCATGACCAATCTATCGAACCGTATGAACTCTG