Detailed information on CNT30442488


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675397Aegilops tauschiiSetaria viridis35.385.1396.65269reverse complement
CNT30503431Aegilops tauschiiNicotiana attenuata42.1323.2495.64321reverse complement
CNT3088853Aegilops tauschiiVigna radiata35.0465.9395.51267reverse complement
CNT30511396Aegilops tauschiiSolanum lycopersicum37.6631.3794.43287forward
CNT30683765Aegilops tauschiiTriticum urartu100.2644.596.47764forward

Expression of CNT30442488

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MNGAKRSAEAVGVQRQPGGLPRSSHPLKSA*

>peptide 2 (43 aa)
AQQLTRHLGVKHCFGVGCASGTKSRQTLNTRYDPKITGVKVGQ*

>peptide 3 (48 aa)
MGDKLHRREGNNPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA*

>peptide 4 (58 aa)
MKTLVRIQCPENPRFPPQRSSMEGESGPKIRPKGVVDGQQVNIPVLPLVGTEGRRRLG*

>peptide 5 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSMKRKRECWLE*

>peptide 6 (34 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRESGGR*

Sequence

>CNT30442488
AGGCGCAGCAGTTGACTAGACATCTAGGGGTAAAGCACTGTTTCGGTGTGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGA
CCCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCGGATCACCAGCTAAGGCCCCTAAA
TGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGA
GCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAA
GAGTGCGTAATAGCTCACTGATCGAGCACCCTTGTGCTAAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGG
AGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTCGATGAAGCGGAAGCGAGAATGTTGGCTTGAGTAATGAAAACATTGGTGAGAATTCAAT
GCCCCGAAAACCCAAGGTTTCCTCCGCAACGTTCATCCATGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAA
TATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCCAAAAGATG