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Detailed information on CNT30442428


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30664460Aegilops tauschiiTriticum dicoccoides45.2197.7998.87354forward
CNT30683422Aegilops tauschiiTriticum urartu101.445.496.47794forward
CNT30412011Aegilops tauschiiPapaver somniferum10029.0294.25783forward

Expression of CNT30442428

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MGDKLHRREGNNPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA*

>peptide 2 (58 aa)
MKTLVRIQCPENPRFPPQRSSMEGESGPKIRPKGVVDGQQVNIPVLPLVGTEGRRRLG*

>peptide 3 (43 aa)
AQQLTRHLGVKHCFGVGCASGTKSRQTLNTRYDPKITGVKVGQ*

>peptide 4 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSMKRKRECWLE*

>peptide 5 (37 aa)
MNGAKRSAEAVGCQNASVGVQRQPGGLPRSSHPLKSA*

>peptide 6 (34 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRESGGR*

Sequence

>CNT30442428
AGGCGCAGCAGTTGACTAGACATCTAGGGGTAAAGCACTGTTTCGGTGTGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGA
CCCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCGGATCACCAGCTAAGGCCCCTAAA
TGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGA
GCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCC
TAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCACCCTTGTGCTAAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGAT
GTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTCGATGAAGCGGAAGCGAGAATGTTGGCTTGAGTAATGA
AAACATTGGTGAGAATTCAATGCCCCGAAAACCCAAGGTTTCCTCCGCAACGTTCATCCATGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGT
AGTCGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCCAAAAGATG