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Detailed information on CNT30441975


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524664Aegilops tauschiiSetaria italica77.0444.8598.05614forward
CNT30639555Aegilops tauschiiNymphaea colorata77.9236.3694.52621forward
CNT30536068Aegilops tauschiiEucalyptus grandis77.2917.8993.51616reverse complement
CNT30513456Aegilops tauschiiJuglans regia77.2919.4194.97616forward
CNT30500477Aegilops tauschiiCoffea canephora77.2933.8394.48616forward
CNT30616920Aegilops tauschiiSesamum indicum65.553.4387.93522reverse complement
CNT30730500Aegilops tauschiiCorchorus capsularis77.2951.995.78616forward
CNT30196411Aegilops tauschiiPisum sativum77.5448.8592.56618forward
CNT30638683Aegilops tauschiiCapsicum annuum62.4896.5190.76498reverse complement
CNT3090649Aegilops tauschiiSolanum tuberosum77.2922.5395.13616forward
CNT30248027Aegilops tauschiiAvena sativa77.2963.2497.24616reverse complement
CNT30310298Aegilops tauschiiCamelina sativa77.2940.3995.94616reverse complement
CNT3068134Aegilops tauschiiLeersia perrieri42.7994.294.13341reverse complement
CNT30655263Aegilops tauschiiRosa chinensis77.2934.1392.05616forward
CNT30206293Aegilops tauschiiHelianthus annuus77.2928.0495.62616forward
CNT30126841Aegilops tauschiiCorymbia citriodora43.2992.7492.75345forward
CNT30722943Aegilops tauschiiTriticum spelta77.2930.699.35616forward
CNT30154922Aegilops tauschiiPrunus persica77.2936.4792.69616reverse complement
CNT30411781Aegilops tauschiiPapaver somniferum88.8319.4193.79708forward
CNT30646402Aegilops tauschiiCannabis sativa76.4148.1490.48609reverse complement
CNT30332807Aegilops tauschiiDioscorea rotundata77.2937.2995.78616reverse complement
CNT30102929Aegilops tauschiiOryza rufipogon77.6740.6797.42619reverse complement

Expression of CNT30441975

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNGESGGRRSGSENVGLSNENIGENPMPRKPKVSSARFVHGG*

>peptide 2 (32 aa)
MSKCIGRGAFRLRGKQRRKRGSTKRKRECRLE*

>peptide 3 (37 aa)
HLGVKHCFGVGCASGTKSRQTLNTRYDPKITGVKVGQ*

>peptide 4 (48 aa)
MGDKLHRREGNNPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA*

Sequence

>CNT30441975
GACATCTAGGGGTAAAGCACTGTTTCGGTGTGGGCTGCGCGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCCAAAAATAACAGGGGT
CAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAA
GGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGA
TGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACGGCGAAAGCGGGGGTCG
ACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCACGGA
GGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGG
CTAGGTTAGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCCAAAAG
ATGCCTTTTCAGGGTAAGAAGGGGTAGAGAAAATGCCCTGAGCCGAGGTCCGAGTAGCAAGCGCTGCAGCGCTGAAGTATGAGCCCCGTGGACTAGC