« Back to Aegilops tauschii search


Detailed information on CNT30441953


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691405Aegilops tauschiiOryza sativa30.359.4487.3795forward
CNT30189868Aegilops tauschiiSecale cereale41.5343.9286.15130forward
CNT30227115Aegilops tauschiiHordeum vulgare41.8546.7987.79131reverse complement
CNT30552577Aegilops tauschiiOryza glaberrima22.683.8188.7371forward
CNT30459269Aegilops tauschiiSaccharum spontaneum61.9819.780.93194forward
CNT3066951Aegilops tauschiiLeersia perrieri74.445.7182.83233forward
CNT30722320Aegilops tauschiiTriticum spelta33.5526.8587.62105forward
CNT30339867Aegilops tauschiiEragrostis tef20.452.5492.1964forward
CNT30109885Aegilops tauschiiOryza longistaminata30.3532.3187.3795forward
CNT30575370Aegilops tauschiiOryza barthii22.684.7788.7371forward

Expression of CNT30441953

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MWWMETVLQISCSRCSVPGEAGQWMEMPACGVFH*

>peptide 2 (34 aa)
EISWYVPCKAVVTGIECSQILHCFPCGGWKLSCK*

>peptide 3 (82 aa)
MCPVKLLLLALSALRFSIASHVVDGNCPANKLLEMFSTWRGRAVDGDAGLWSVPLSWLKLTSSMVMLLDDTNSSGRPPDSEL*

Sequence

>CNT30441953
AGAAATAAGTTGGTATGTGCCCTGTAAAGCTGTTGTTACTGGCATTGAGTGCTCTCAGATTCTCCATTGCTTCCCATGTGGTGGATGGAAACTGTCCTGC
AAATAAGTTGCTCGAGATGTTCAGTACCTGGAGAGGCCGGGCAGTGGATGGAGATGCCGGCTTGTGGAGTGTTCCATTGAGCTGGTTAAAGCTGACATCA
AGTATGGTGATGCTGCTGGACGACACCAATTCCAGCGGCAGGCCACCGGACAGTGAGTTGTGAGAGAGGTTGAGGCGCAAGAGGCTGGTGAGGTTGCCAA
GGAACGGCGAGAT