Detailed information on CNT30441862


BLAST search results

BLAST vs Swiss-Prot:
sp|O65660|PLAT1_ARATH, E-value = 1e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523988Aegilops tauschiiSetaria italica15.2840.7391.04134forward
CNT30549200Aegilops tauschiiIpomoea triloba11.2933.4587.8899forward
CNT30565935Aegilops tauschiiActinidia chinensis13.9125.184.43122forward
CNT30243815Aegilops tauschiiAvena sativa11.7434.5691.26103forward
CNT30463851Aegilops tauschiiSaccharum spontaneum22.3533.0586.73196forward
CNT30596095Aegilops tauschiiOryza meridionalis9.3530.7190.2482forward

Expression of CNT30441862

Peptides detected in this lncRNA

>peptide 1 (59 aa)
PQLITTLTNGTQYKSGPDYFATTSSTNSSSSTSPRPARRTRITGPARPAPQLIATNHTR*

>peptide 2 (38 aa)
MADGSERDRAWCLQMRRLLGGVDGIKWKWVMRPRGALAV

>peptide 3 (81 aa)
MAHSTNQVPIISPPPAARTHLVVHLRVRRGARGSRGRHDRPRSLLLPTTHDDEEAGVQLTRSYSSAAAPSAGQRSTTASSL*

>peptide 4 (72 aa)
MRQGAPAMHGPRPLKMSSVMLASVPAFQIDPVRTYTVYTHSWLSPPTAPPPLVSCGSVEAGKVNAMSTRAEQ*

>peptide 5 (43 aa)
MTKRPAYSLLDLTPRRRRHRRGSGRRRPRACRARRRWRATARR*

Sequence

>CNT30441862
CCGCAACTAATCACAACTCTCACTAATGGCACACAGTACAAATCAGGTCCCGATTATTTCGCCACCACCAGCAGCACGAACTCATCTAGTAGTACATCTC
CGCGTCCGGCGCGGCGCACGCGGATCACGGGGCCGGCACGACCGGCCCCGCAGCTTATTGCTACCAACCACACACGATGACGAAGAGGCCGGCGTACAGC
TTACTCGATCTTACTCCTCGGCGGCGGCGCCATCGGCGGGGCAGCGGTCGACGACGGCCTCGAGCTTGTAGGGCGCGGCGTCGGTGGCGAGCCACTGCTC
GACGGTGAAGAGCTGCTGGGCGCAGCCGCGGTGCGGGCCGGTGACGGTGACCTCCACGTAGTTGCAGTACCAGCCGTGGTGCGCGCCGGTGCCGTCGGAG
GACACCCTCATGCGGCAGGGCGCGCCGGCCATGCACGGCCCGCGCCCGCTGAAGATGTCCAGCGTGATGTTGGCGTCCGTCCCGGCCTTCCAGATCGACC
CCGTGCGCACGTACACCGTGTACACGCACTCCTGGCTGTCGCCGCCCACCGCGCCGCCGCCCTTGGTCAGCTGCGGATCCGTCGAAGCCGGCAAGGTAAA
TGCGATGAGTACACGAGCAGAGCAATAATCATGTCGCGAGGAGAGGAGAGGGAGGACGGTGAGTCACCTTGATCTGGGTCGGGAGATCGCGGCCATGCGC
CAGCGCGGCGGCGGAGACGGCGACGGCGAAGGCGAGGAGGAGGGCGGCGAGCCGAGCCATGGCTGACGGGTCGGAGCGCGATCGAGCTTGGTGTCTTCAG
ATGCGGAGATTGCTGGGGGGAGTGGATGGTATAAAATGGAAGTGGGTGATGAGGCCGCGTGGGGCCTTGGCTGTCAC