Detailed information on CNT30441792


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555751Aegilops tauschiiOryza glaberrima65.3357.0896.07407reverse complement
CNT30346086Aegilops tauschiiEragrostis tef65.3353.6996.56407forward
CNT30362056Aegilops tauschiiSorghum bicolor22.4733.9893.57140reverse complement
CNT30595568Aegilops tauschiiOryza meridionalis56.3490.4696.58351reverse complement
CNT30103741Aegilops tauschiiOryza rufipogon65.3377.3894.84407reverse complement

Expression of CNT30441792

Peptides detected in this lncRNA

>peptide 1 (59 aa)
LVTRPGDIRSENADMSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRNPRKGCRPMGTRK*

>peptide 2 (70 aa)
MPGSADTDFSLKAKKKKWANTRPSGRTCRLRLRAPADTFRSTFTCEPKSSCQTPSFLISVLAFFILRRGI*

Sequence

>CNT30441792
TTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACACGACCGCCTGCCAGTGGAAGGCTTTCTG
CGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACT
GAACCATGCCTGGATCGGCGGACACGGATTTCTCTCTAAAGGCGAAGAAAAAGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGCTCCGGCT
CCGCGCACCTGCTGACACCTTTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGCCAAACTCCTTCCTTTCTCATTTCAGTCCTCGCCTTTTTCATC
TTACGTAGGGGCATTTAGTCTTTTGATTAGAGTGGAGGTCGCGAGAGAGCAGAGCGTACCGCCCTGCCATAGTCACGAGGATCTTAATAGTCGGTCGCGA
CTGTTGTCATTGTCAACGATGGTTGAAACCTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTACCCCAAACCGACACAGG
TGAACAAGTAGAGCATACTAGGG