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Detailed information on CNT30441550


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30709956Aegilops tauschiiGlycine max21.933.4195.33150forward
CNT30554621Aegilops tauschiiOryza glaberrima30.3696.7499.04208forward
CNT3062651Aegilops tauschiiArabidopsis lyrata70.9558.4193.83486reverse complement
CNT30370808Aegilops tauschiiOryza glumipatula30.3695.8599.52208forward

Expression of CNT30441550

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSKCIGRGAFRLRGKQRRKRGSTKRKRECRLE*

>peptide 2 (93 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNGESGGRRSGSENVGLSNENPRFPPQGSSTEGESGPKIRPKGVVDGQQVNIPVLPLVGTEGRRRLG*

>peptide 3 (48 aa)
MGDKLHRREGNNPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA*

Sequence

>CNT30441550
CAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCGGATCACCAGCTAAGGCCCCTAAATG
ACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGC
GCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACG
GCGAAAGCGGGGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGG
GCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCCG
AAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCCAAAAGATGCCTTTTCAG
GGTAAGAAGGGGTAGAGAAAATGCCCTGAGCCGAGGTCCGAGTAGCAAGCGCTGCAGCGCTGAAGTATGAGCCCCGTGGACTAGC