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Detailed information on CNT30441515


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693553Aegilops tauschiiOryza sativa98.9145.295.75636forward
CNT30730376Aegilops tauschiiCorchorus capsularis30.4849.1287.76196forward
CNT30196209Aegilops tauschiiPisum sativum52.5763.1887.57338forward
CNT30300556Aegilops tauschiiTriticum aestivum98.9137.2199.37636forward
CNT30542882Aegilops tauschiiBrassica napus98.1334.9689.06631forward
CNT30236148Aegilops tauschiiBrassica oleracea63.1426.4388.42406forward
CNT30628236Aegilops tauschiiDaucus carota34.6820.5289.69223forward
CNT30361727Aegilops tauschiiSorghum bicolor44.6394.4195.12287forward
CNT30425595Aegilops tauschiiPapaver somniferum87.0995.7389.11560forward
CNT30109402Aegilops tauschiiOryza longistaminata98.9148.2996.07636forward
CNT30148380Aegilops tauschiiBrachypodium distachyon64.0730.3897.09412forward
CNT30100129Aegilops tauschiiOryza rufipogon64.2339.3396.13413forward
CNT30116897Aegilops tauschiiOryza nivara26.4435.4294.12170forward
CNT30557406Aegilops tauschiiPanicum hallii55.3784.3695.51356forward

Expression of CNT30441515

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSFFNLLKSKPLGPLRGSNHGARRSQKRIVSPPKITSLVGERIRYLPKPVGP*

>peptide 2 (29 aa)
TVNVKNRFQITIDSLFKTCCSSSGSSCMP*

Sequence

>CNT30441515
ACTGTTAATGTAAAGAACAGGTTCCAAATCACGATCGATTCCCTTTTCAAAACCTGCTGCAGCAGCTCGGGCTCTTCCTGCATGCCATAAATGGCCCACA
AAAAAGAAGAATCCTAGAACAAAATGAGAAGTTGATAACCAACTTCTAGGAGAGACATAATTAACTGCATTGATCTCGGTAGCTACGCCACCCACGGAAT
TTAAAGAGCCTAAAGGAGCGTGGGTCATATATTCTGCTGAGCGTCGTTCTTGCCAAGGTTGTATGTCTTTTTTCAACCTACTCAAGTCCAAACCGTTGGG
GCCCCTTAGAGGTTCTAACCATGGAGCACGAAGGTCCCAAAAACGCATAGTTTCCCCTCCAAAGATAACCTCCCTAGTTGGGGAACGCATTAGATATTTA
CCTAAACCTGTGGGTCCTTGAGCGGATCCCACATTAGCTCCAAGACGCTGGTCTCTAACTAGAAAAGTAAATGCTTGAGCTTGAGAAGCTTGTGGCCCGG
TGGGTCCATAAAACTCACTCGGATAAGCTGTATTATTGAACCATACAAAACAACAAGCGATAAAACCAAAGACAGATAAAGCAGCTAAACTATAAGACAA
GTAAGCTTCTCCAAACCATACAAATGCACGGCGAGCCCATGCG