« Back to Aegilops tauschii search


Detailed information on CNT30441436


BLAST search results

BLAST vs Swiss-Prot:
sp|Q4LB22|METK3_HORVU, E-value = 2e-95

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674516Aegilops tauschiiSetaria viridis41.6234.290.52211forward
CNT30522677Aegilops tauschiiSetaria italica47.7327.2889.26242forward
CNT30641080Aegilops tauschiiNymphaea colorata47.7327.0486.36242forward
CNT30515028Aegilops tauschiiJuglans regia34.7120.7383.52176forward
CNT30373104Aegilops tauschiiArabidopsis thaliana48.9229.5685.48248forward
CNT30381493Aegilops tauschiiManihot esculenta49.3133.3883.6250forward
CNT30712616Aegilops tauschiiGlycine max50.331.3781.96255forward
CNT3047443Aegilops tauschiiPrunus dulcis32.7413.9186.75166forward
CNT30638840Aegilops tauschiiCapsicum annuum41.4224.5981.9210forward
CNT3090332Aegilops tauschiiSolanum tuberosum34.1226.6282.08173forward
CNT30188757Aegilops tauschiiSecale cereale49.1156.2195.18249forward
CNT30303722Aegilops tauschiiTriticum aestivum47.9340.199.59243forward
CNT30225566Aegilops tauschiiHordeum vulgare50.174.2797.64254forward
CNT30508528Aegilops tauschiiSolanum lycopersicum24.2623.784.55123forward
CNT30172560Aegilops tauschiiTrifolium pratense50.337.4482.35255forward
CNT30144304Aegilops tauschiiMedicago truncatula46.5536.783.9236forward
CNT30667060Aegilops tauschiiTriticum dicoccoides50.14095.28254forward
CNT3014998Aegilops tauschiiZea mays45.9642.0684.55233forward
CNT30624603Aegilops tauschiiDaucus carota48.9237.5885.89248forward
CNT30686069Aegilops tauschiiTriticum urartu50.129.8599.61254forward
CNT30363315Aegilops tauschiiSorghum bicolor47.7329.1688.02242forward
CNT30570759Aegilops tauschiiVitis vinifera28.825.9886.3146forward
CNT3055164Aegilops tauschiiAmborella trichopoda43.7919.384.23222forward
CNT3035650Aegilops tauschiiCucumis melo48.9218.486.29248forward
CNT30148817Aegilops tauschiiBrachypodium distachyon36.491690.27185forward
CNT30574675Aegilops tauschiiOryza barthii28.0131.4988.03142forward
CNT30116702Aegilops tauschiiOryza nivara39.4519.4784200forward
CNT30174546Aegilops tauschiiVigna angularis30.5720.2683.87155forward
CNT30113329Aegilops tauschiiFicus carica43.5920.5287.78221forward

Expression of CNT30441436

Peptides detected in this lncRNA

>peptide 1 (35 aa)
VKVLLHELEDLPVGDLAGAVGVDEHRQRLRHTDGV*

>peptide 2 (59 aa)
MGAADDEAARRVQVEDGVLIEVLCGDHRLDDMLLEVRSNLVVGDGLVVLGGDEDGVHTNR

>peptide 3 (70 aa)
MMILRPVRPASPWGPPMTKRPDGFRWKMVFSSRYFAGITGLMTCSLRSAAISSLVTVSSCWVEMRTVCTRT

Sequence

>CNT30441436
GTCAAAGTTCTCCTTCACGAGCTTGAGGATCTCCCTGTCGGGGATCTTGCCGGTGCCGTAGGAGTCGACGAACACAGACAAAGGCTCAGGCACACCGATG
GCGTATGAGATCTGCACAATGCAGCGGCGTGCGAGGCCGCTGGCGATGATGCTCTTGGCGGCCTGCCTGGCAATGTAGGCGCCACTACGGTCGACCTTGG
TTGGGTCCTTGCCAGAGAAGGCACCGCCGCCGTGGGCTCCCCAGCCACCATAGGCACCGCCGCCGTGGGCTCCCCAGCCACCATAGGTGTCGATGATGAT
CTTGCGGCCGGTGAGACCGGCGTCACCATGGGGGCCGCCGATGACGAAGCGGCCAGACGGGTTCAGGTGGAAGATGGTGTTCTCATCGAGGTACTTTGCG
GGGATCACCGGCTTGATGACATGCTCCTTGAGGTCCGCAGCAATCTCGTCGTTGGTGACGGTCTCGTCGTGCTGGGTGGAGATGAGGACGGTGTGCACAC
GAACAGG