« Back to Aegilops tauschii search


Detailed information on CNT30441217


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07078|HSP83_ORYSJ, E-value = 2e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675663Aegilops tauschiiSetaria viridis26.5142.3788.83197forward
CNT30378101Aegilops tauschiiArabidopsis thaliana33.7828.4686.85251forward
CNT30282434Aegilops tauschiiChenopodium quinoa32.179.7487.45239forward
CNT30379122Aegilops tauschiiManihot esculenta29.3449.7781.19218forward
CNT30402836Aegilops tauschiiBeta vulgaris21.2716.3685.44158forward
CNT30631186Aegilops tauschiiVigna unguiculata42.2627.7185.35314forward
CNT30712266Aegilops tauschiiGlycine max13.4636.589100forward
CNT30635894Aegilops tauschiiCapsicum annuum26.1134.4686.08194forward
CNT3094731Aegilops tauschiiSolanum tuberosum27.5913.6684.88205forward
CNT30187559Aegilops tauschiiSecale cereale31.935.5394.51237forward
CNT30298345Aegilops tauschiiTriticum aestivum34.0535.9497.23253forward
CNT30224612Aegilops tauschiiHordeum vulgare33.5143.8491.57249forward
CNT30394033Aegilops tauschiiTriticum turgidum34.0518.797.23253forward
CNT30560520Aegilops tauschiiActinidia chinensis23.0153.9484.21171forward
CNT30510308Aegilops tauschiiSolanum lycopersicum22.6165.1286.31168forward
CNT30554643Aegilops tauschiiOryza glaberrima13.3220.8488.8999forward
CNT30250601Aegilops tauschiiAvena sativa20.3235.5398.01151forward
CNT30665102Aegilops tauschiiTriticum dicoccoides52.4994.294.62390forward
CNT30314068Aegilops tauschiiCamelina sativa55.9927.4482.93416forward
CNT304322Aegilops tauschiiZea mays36.6147.6489.34272forward
CNT30227528Aegilops tauschiiAnanas comosus32.5733.2985.95242forward
CNT30625469Aegilops tauschiiDaucus carota55.9927.8181.25416forward
CNT30721901Aegilops tauschiiTriticum spelta34.4550.290.62256forward
CNT30352420Aegilops tauschiiEragrostis tef56.2667.5388.52418forward
CNT30362691Aegilops tauschiiSorghum bicolor21.2715.9889.24158forward
CNT30481150Aegilops tauschiiChara braunii25.1713.2379.68187forward
CNT30704690Aegilops tauschiiPrunus avium55.1820.1882.68410forward
CNT3055965Aegilops tauschiiAmborella trichopoda29.4825.285.84219forward
CNT30107297Aegilops tauschiiOryza longistaminata19.6532.5293.84146forward
CNT30323609Aegilops tauschiiAsparagus officinalis55.1824.6286.1410forward
CNT30149846Aegilops tauschiiBrachypodium distachyon21.6736.3490.68161forward
CNT30103353Aegilops tauschiiOryza rufipogon56.2641.6390.67418forward
CNT30577638Aegilops tauschiiOryza barthii44.0150.4690.52327forward
CNT30584451Aegilops tauschiiEchinochloa crusgalli26.3836.5788.78196forward
CNT30594767Aegilops tauschiiEragrostis curvula8.3424.0393.5562forward

Expression of CNT30441217

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MRWILVPKVLGSSRLKPEVSREVSKSSITRSLTDLSFLSASARLRSSSMMAFSGLISMVFLLDM*

>peptide 2 (85 aa)
MLESLKAWAFMILSMLAVHPYSPVTRQQGESTTRSETITFSTLSPSTSLMTLHSPSNFSLSSSCFFFSFSRKGEFSTAFLLSPVM*

Sequence

>CNT30441217
ACAATAACGAACTGTTCCACGAGTACCACAAACAGCTAACCGCGCTTAATGTTTGGCCAGCCAAAAGACAAAACCGATACAGCTAAAACGTGCCAAAACC
ATCCAACGTCGACACTAAGATAAAAACAACTAGGCGGTGCAGGGCATGGACATCTGACGACGACAGCCGACAGGCAGCCTTGGCGCTTAGTCGACCTCCT
CCATCTTGCTCTCGCCGGCGTCGTCCTCCAGGGGCGGCATGTCGGTGTCGTTCTCTGGCCAAGCTTGAGCATGCGGTGGATCCTGGTGCCGAAGGTGTTG
GGGTCCTCCAGGCTGAAGCCGGAGGTGAGCAGGGAGGTCTCGAAGAGCAGCATCACGAGGTCCTTGACAGACTTGTCGTTCTTGTCGGCATCGGCACGCT
TACGGAGCTCGTCCATGATGGCGTTCTCAGGGTTGATCTCCATGGTCTTCTTGCTCGACATGTAGCCAGCCATGCTCGAGTCCCTTAAGGCCTGGGCCTT
CATGATCCTCTCCATGTTGGCGGTCCACCCATATTCGCCAGTCACCAGACAGCAAGGGGAGTCCACCACACGGTCAGAGACGATAACCTTCTCAACCTTG
TCGCCCAGCACCTCCTTGATGACCTTGCACAGCCCCTCAAACTTCTCCTTGAGCTCCTCCTGCTTCTTCTTCTCCTTCTCAAGGAAGGGAGAGTTCTCCA
CAGCCTTCTTGCTCTCACCAGTGATGTAGTAGATCTCGTTCTG