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Detailed information on CNT30441215


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 6e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Aegilops tauschiiOryza sativa5061.4294.58277forward
CNT30677847Aegilops tauschiiSetaria viridis38.9944.1795.37216forward
CNT30522472Aegilops tauschiiSetaria italica5050.4694.95277forward
CNT30300990Aegilops tauschiiTriticum aestivum98.74102.8296.89547forward
CNT30565712Aegilops tauschiiActinidia chinensis37.1868.986.89206forward
CNT30253187Aegilops tauschiiAvena sativa51.2653.0896.83284forward
CNT30143346Aegilops tauschiiLolium perenne50.1847.6895.68278forward
CNT30581397Aegilops tauschiiEchinochloa crusgalli50.7247.8795.02281forward

Expression of CNT30441215

Peptides detected in this lncRNA

>peptide 1 (44 aa)
FRDKLLQFPFQTSSSTSLQQQHQLTRREQTPRRYHCSCTENHEP*

>peptide 2 (71 aa)
MSPEMRFTPPLRASRRIAGLVMPWMLSRSTFRWRFAPPLPSPLPPLPRPDILRASPLSTVGLDWIVLVVGDE

>peptide 3 (50 aa)
SGINCCNFHSKLLPVHLYNSNISSQDGSKHQGDTTALARRTTNPRQQLDR*

Sequence

>CNT30441215
TTTCAGGGATAAACTGCTGCAATTTCCATTCCAAACTTCTTCCAGTACATCTCTACAACAGCAACATCAGCTCACAAGACGGGAGCAAACACCAAGGAGA
TACCACTGCTCTTGCACGGAGAACCACGAACCCTAGACAGCAACTAGATAGATAGCACTACTACTCTCGGTCGGACGGCGGCGTCGCGAGCTGGATCGAT
GAACCCTCGGCCTAGCCTCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGCGTCGCGGATGACGTTCT
CGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCTTCACGCCGCCCCTGCGCGCCAGCCGCCGGATCGCCGGCTTGGT
GATGCCCTGGATGTTGTCGCGGAGCACCTTCCGGTGGCGCTTCGCGCCGCCCTTGCCCAGCCCCTTGCCTCCCTTGCCGCGGCCCGACATCCTCCGCGCT
TCTCCCCTCTCTACGGTGGGATTGGATTGGATTGTTTTGGTGGTGGGCGATGAG