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Detailed information on CNT30440702


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY4|METE2_ORYSJ, E-value = 2e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672500Aegilops tauschiiSetaria viridis46.9748.1494.84155forward
CNT30404178Aegilops tauschiiBeta vulgaris28.7924.7484.2195forward
CNT30563287Aegilops tauschiiActinidia chinensis52.4237.2882.08173forward
CNT30555769Aegilops tauschiiOryza glaberrima82.1263.7693.36271forward
CNT30689646Aegilops tauschiiTriticum urartu84.8597.2299.64280forward
CNT30721905Aegilops tauschiiTriticum spelta10097.63100330forward
CNT30361575Aegilops tauschiiSorghum bicolor78.4840.5390.35259forward
CNT30597233Aegilops tauschiiOryza meridionalis82.1273.6492.99271forward
CNT30323045Aegilops tauschiiAsparagus officinalis71.2149.0680.43235forward
CNT30104304Aegilops tauschiiOryza rufipogon82.1276.5594.1271forward
CNT30578403Aegilops tauschiiOryza barthii82.1276.3494.1271forward
CNT30118019Aegilops tauschiiOryza nivara81.2176.1492.54268forward
CNT30333335Aegilops tauschiiCynara cardunculus71.5266.1183.05236forward

Expression of CNT30440702

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSNGLGRHRAWRWCQEPDHSRRRCCWGCT*

>peptide 2 (57 aa)
MYLIPASAICFQMLALRSVATFSKSSALLLPSQKDSRANLSSLLGPMRGYPTMWDAIF

Sequence

>CNT30440702
CCTCCTTGTACTCATTGATAGCCTTGTGAGAAGAGTAGGAGAACTTGGTGCTCAAATTGATCTCCCCACCGGTCCATGAGTAACGGTCTGGGACGGCACC
GAGCATGGCGGTGGTGTCAAGAACCTGATCATAGTAGGAGAAGGTGTTGCTGGGGATGTACTTGATCCCAGCATCAGCCATCTGCTTCCAGATGCTGGCC
CTGAGGTCGGTGGCAACCTTCTCCAAATCCTCGGCGCTGCTCTTGCCATCCCAGAAAGACTCCAGGGCAAACTTGAGCTCCCTCTTGGGGCCCATGCGCG
GGTATCCGACAATGTGGGACGCCATCTTTC