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Detailed information on CNT30440426


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512691Aegilops tauschiiJuglans regia26.877.7682.54126forward
CNT30186990Aegilops tauschiiSecale cereale52.4566.3196.34246forward
CNT30393881Aegilops tauschiiTriticum turgidum60.3470.2296.11283forward
CNT30511330Aegilops tauschiiSolanum lycopersicum22.8126.2385.05107forward
CNT30624277Aegilops tauschiiDaucus carota29.2128.7883.21137forward
CNT30721746Aegilops tauschiiTriticum spelta68.8720.0996.59323forward
CNT30596728Aegilops tauschiiOryza meridionalis25.1624.3395.76118forward
CNT30371441Aegilops tauschiiOryza glumipatula27.0831.1392.13127forward
CNT3024196Aegilops tauschiiPopulus trichocarpa21.3222.0390100forward
CNT30150825Aegilops tauschiiBrachypodium distachyon69.0854.7390.74324forward
CNT30104395Aegilops tauschiiOryza rufipogon25.3724.0996.64119forward
CNT30578506Aegilops tauschiiOryza barthii25.167.4296.61118forward
CNT30117442Aegilops tauschiiOryza nivara27.0831.292.13127forward
CNT30725998Aegilops tauschiiLupinus angustifolius26.6559.5282.4125forward

Expression of CNT30440426

Peptides detected in this lncRNA

>peptide 1 (47 aa)
DKQISMHNLLYVDRRIQTTTAKTDNKHHQVTKVSKNDIHTAIHVLDG*

>peptide 2 (32 aa)
TNKYPCIIFFMWTEESRPRQRKLITNITRLPK*

>peptide 3 (50 aa)
MPGVPLHTVLVVGVTSLEHWLLSPATTSNLTNHGTAAAWDNLLGTRGELDP

Sequence

>CNT30440426
CGACAAACAAATATCCATGCATAATCTTCTTTATGTGGACCGAAGAATCCAGACCACGACAGCGAAAACTGATAACAAACATCACCAGGTTACCAAAGTG
AGCAAAAACGACATCCATACTGCAATACATGTCCTTGACGGGTAATCTAGAGGCAGCAAACATAGATAAACAGCAACGATAGCTCTAAGTGGCCTTGTCG
GCCTTGGCAGCAGAGGCAGCAGCCTGGCCTCTGAGACGACCAGTCCTCCTGGCAGCAATGAGACCAACCTTCTGGCCAGGTGGTGCATCACGGCGGACAG
TGGAAGCGTGACCAATATGCCAGGAGTTCCTCTTCACACGGTACTTGTGGTAGGCGTTACCAGCCTTGAGCATTGGCTTCTCAGTCCTGCCACCACCAGC
AACCTGACCAATCATGGCACGGCAGCTGCTTGGGACAATCTTCTTGGCACCAGAGGGGAGCTTGATCCT