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Detailed information on CNT30440100


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 6e-149

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186317Aegilops tauschiiSecale cereale76.6778.2895.91782forward
CNT30299182Aegilops tauschiiTriticum aestivum97.0693.1397.27990forward
CNT30393906Aegilops tauschiiTriticum turgidum46.5766.0698.95475forward
CNT30552325Aegilops tauschiiOryza glaberrima35.2938.5994.17360forward
CNT30250793Aegilops tauschiiAvena sativa67.4567.4592.15688forward
CNT30665254Aegilops tauschiiTriticum dicoccoides92.0694.1898.3939forward
CNT30685359Aegilops tauschiiTriticum urartu73.5374.796.4750forward
CNT30362364Aegilops tauschiiSorghum bicolor55.5955.793.3567forward
CNT30596886Aegilops tauschiiOryza meridionalis57.7557.8693.55589forward
CNT30574623Aegilops tauschiiOryza barthii34.3134.7991.43350forward
CNT30603531Aegilops tauschiiOryza punctata61.5757.6193.79628forward
CNT3063160Aegilops tauschiiSelaginella moellendorffii43.1456.3487.73440forward

Expression of CNT30440100

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCVLASFASGELRLTVGL*

>peptide 2 (35 aa)
MQHLSVRTTQSQNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 3 (29 aa)
MAQRQWITSSSRFLAKVSGSADRPAVSQP*

>peptide 4 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSAKASGSSARPRGSKLPPG*

Sequence

>CNT30440100
TTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGA
ATCGCCCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCAGAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGC
CATGAAGTTGTCGGCCTAGAGGTTGAGCTGACTGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAG
GTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCC
TTCACCTTGAGCTCCGCGAAGGCCTCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCCAGCGGGC
CGCCGGCCACGCGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCCGGGAA
GACGCAGCCGAGCGCGCCGAGCATGGCCCAACGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGGCCCGCGGTG
TCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGCGGGTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGC
TGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCCCCGAAGGGCGCCGCCCTGGAGGCCTTCACAGGTGTGCCCGC
CATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATCGCGCGCTGCGTACTCGCTAGCTTTGCTTCGGGCGAGCTGAGGCTGACAGTAGGACTGTAG
GAGGCGCTGGTGGTCGTTGG