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Detailed information on CNT30439823


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 3e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619448Aegilops tauschiiSesamum indicum64.4325.3192.71288reverse complement
CNT30197509Aegilops tauschiiPisum sativum66.6713.0989.6298reverse complement
CNT30221864Aegilops tauschiiHordeum vulgare64.4314.1998.61288reverse complement
CNT30586133Aegilops tauschiiMusa acuminata45.419.1896.06203reverse complement
CNT30468144Aegilops tauschiiSaccharum spontaneum64.4310.2399.31288reverse complement
CNT30627916Aegilops tauschiiDaucus carota63.097.8293.97282reverse complement
CNT30574574Aegilops tauschiiVitis vinifera64.438.5693.4288reverse complement
CNT3056786Aegilops tauschiiAmborella trichopoda28.8616.3992.25129reverse complement
CNT30103415Aegilops tauschiiOryza rufipogon64.432998.61288reverse complement

Expression of CNT30439823

Peptides detected in this lncRNA

>peptide 1 (35 aa)
ESRMRGDPHVRFGGRGYPDPTIIMPLQCYLVQLHL*

>peptide 2 (69 aa)
EPDEGRPSRPVRRAGISRPYYHYAFAMLLGSTPFVTFSRMWDSLSSWVDSRSSFILLVSSFLINKSSQE*

Sequence

>CNT30439823
GAGAGCCGGATGAGGGGAGACCCTCACGTCCGGTTCGGAGGGCGGGGATATCCCGACCCTACTATCATTATGCCTTTGCAATGTTACTTGGTTCAACTCC
ATTTGTGACCTTTTCTCGTATGTGGGACTCTCTATCTTCTTGGGTAGATTCTAGATCGTCTTTCATTTTGTTAGTGAGTAGTTTTCTTATTAATAAGTCA
AGTCAAGAGTAATAAGAGAACTGTAGGAGCTTGCCAGGACGGCTTGGTAAGCAAGCTACCTGTTATGTAGGCGCCAACTCCCAATTCTAGATCGTCTTTC
ATTTTGTTAGTGAGTAGTTTTCTTATTAATAAGTCAAGTCAAGAGTAATAAGAGAACTGTAGGAGCTTGCCAGGACGGCTTGGTAAGCAAGCTACCTGTT
ATGTAGGCGCCAACTCCCAGTTCTTTCTCTTCTTTCTTTTTGATTTT