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Detailed information on CNT30439818


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692288Aegilops tauschiiOryza sativa71.5743.3290.65214forward
CNT30522081Aegilops tauschiiSetaria italica71.5736.9692.06214forward
CNT30392320Aegilops tauschiiTriticum turgidum66.5699.598.99199forward
CNT30249006Aegilops tauschiiAvena sativa70.5724.2591.94211forward
CNT30444735Aegilops tauschiiSaccharum spontaneum70.5736.9591.47211forward
CNT30684370Aegilops tauschiiTriticum urartu49.1649.6698.64147forward
CNT30721558Aegilops tauschiiTriticum spelta70.994.6499.06212forward
CNT30341886Aegilops tauschiiEragrostis tef67.5674.5487.62202forward
CNT30596661Aegilops tauschiiOryza meridionalis68.957.5487.86206forward
CNT30369862Aegilops tauschiiOryza glumipatula71.2496.8290.61213forward
CNT30106627Aegilops tauschiiOryza longistaminata65.2296.0691.28195forward
CNT30102585Aegilops tauschiiOryza rufipogon69.2358.8188.89207forward
CNT30575680Aegilops tauschiiOryza barthii71.5785.9490.65214forward
CNT30116256Aegilops tauschiiOryza nivara70.993.3991.04212forward
CNT30593977Aegilops tauschiiEragrostis curvula70.995.588.68212forward
CNT30556620Aegilops tauschiiPanicum hallii70.921.5488.21212forward

Expression of CNT30439818

Peptides detected in this lncRNA

>peptide 1 (86 aa)
RWLSPSHHFHSTREVPSRTPPCSLSPWRASKLRRMLFTMRMQRKPLPTSLLSVHITDSSRYSGLNGTSFTCTPKQIIPLPLLISAK*

>peptide 2 (85 aa)
ALVVALAPLPQHEGGAVAHAAVLLVAVESVKVEADVVHHANAAEALADVAALRPHHGLVEVLRVEWHELHLHTQTNHSASITDKR*

>peptide 3 (32 aa)
SAGCRPRTTSTARGRCRRARRRAPCRRGERQS*

Sequence

>CNT30439818
AGCGCTGGTTGTCGCCCTCGCACCACTTCCACAGCACGAGGGAGGTGCCGTCGCGCACGCCGCCGTGCTCCTTGTCGCCGTGGAGAGCGTCAAAGTTGAG
GCGGATGTTGTTCACCATGCGAATGCAGCGGAAGCCCTTGCCGACGTCGCTGCTCTCCGTCCACATCACGGACTCGTCGAGGTACTCCGGGTTGAATGGC
ACGAGCTTCACCTGCACACCCAAACAAATCATTCCGCTTCCATTACTGATAAGCGCTAAATAAAACGAATCTAGATTCGGAAACTGAACGGACGAACAG