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Detailed information on CNT30439348


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ZBP3|H2B2_ORYSJ, E-value = 4e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523103Aegilops tauschiiSetaria italica64.9955.4791.2375forward
CNT30244799Aegilops tauschiiAvena sativa64.8252.0993.85374forward
CNT30455629Aegilops tauschiiSaccharum spontaneum65.8644.2992.37380forward
CNT303693Aegilops tauschiiZea mays40.7368.1292.34235forward
CNT30557628Aegilops tauschiiPanicum hallii63.0865.3592.86364forward

Expression of CNT30439348

Peptides detected in this lncRNA

>peptide 1 (33 aa)
LNIEAGTITISRDPETSRCDSYRITRPQTHPNS*

>peptide 2 (49 aa)
MVGFLLYRASLAASPASFSKMSLMKEFMMDMALEEMPMSGCTCFSTLKM*

Sequence

>CNT30439348
ACTGAACATTGAGGCAGGCACCATTACCATTTCTCGAGATCCAGAAACATCGCGGTGCGATTCTTACAGGATAACACGGCCACAAACACACCCGAACAGC
TAACTACGAGACACAGGAAGACGAACAGCCTAAGAGGAGGTGAACTTGGTGACAGCCTTGGTCTGGATCTCCCGGGACGTGATGGTTGGCTTCTTGTTGT
ACCGCGCCAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGG
GTGCACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTACGTCTCCACGCTCTTCTTGGCCTTCTTCTTGCCCTTCTTGTCGCCGCCCTCCTTGGCGGCC
GACTTCCCCGCCGGCAGCCGCTTCTCGGCCTTGGGCTTCTTCCCGGCGGGAGTCTTCTCGGCCTTCTCCGCCGCGGGCTCCTCCTCCGCGGGCTTCTTCG
CCGCCGGCTTCTTCTCGGCCTTGGGCGCCATGGATGCGGACGGTGGGGTGGACTGGGGCTGGGTTTCGCCGGAGGAT