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Detailed information on CNT30439298


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30403755Aegilops tauschiiBeta vulgaris14.2320.9291.24137reverse complement
CNT30223386Aegilops tauschiiHordeum vulgare95.1289.7298.8916forward
CNT30592666Aegilops tauschiiMusa acuminata35.5135.1588.01342forward
CNT30655399Aegilops tauschiiRosa chinensis69.3783.1989.37668reverse complement
CNT30210811Aegilops tauschiiHelianthus annuus4.9821.8297.9248reverse complement
CNT30683092Aegilops tauschiiTriticum urartu48.8121.2698.94470forward
CNT30723089Aegilops tauschiiTriticum spelta32.61100100314forward
CNT30418333Aegilops tauschiiPapaver somniferum58.1572.1691.07560forward
CNT30575766Aegilops tauschiiOryza barthii17.9623.2597.69173forward

Expression of CNT30439298

Peptides detected in this lncRNA

>peptide 1 (86 aa)
HSSSVLSEPCGKVSHHMAHQIDLLREPYVRTGLAKEVRSRFPLPLKCTASAVLRPLLPFPNPKMTPPPAWHYMGIGMACRPASLGF*

>peptide 2 (61 aa)
MQGAVLALPSQDRSHTCHVRDRPPQLCIDRKAGRQSPQPTGVVTSSMSPLDSRHAMIPQGG*

>peptide 3 (37 aa)
MRLKWGVCCPYWAGPFPIRPHRRGISALLLPICKAPS*

Sequence

>CNT30439298
TCATTCGTCTTCAGTGCTCTCCGAACCGTGCGGGAAGGTTTCCCATCACATGGCTCACCAAATTGATCTTCTGCGGGAACCTTATGTAAGAACAGGCCTG
GCAAAAGAAGTACGGTCTCGCTTTCCTTTGCCACTCAAGTGTACGGCATCTGCCGTGCTTAGGCCCCTTCTTCCCTTCCCTAATCCAAAAATGACTCCAC
CGCCTGCCTGGCACTATATGGGTATAGGTATGGCGTGCAGGCCAGCCTCCCTTGGATTTTAGGTGATTAACTACCGAAGCGAAGAAAAGGCTGGATCAAG
AAAAGGGGGGTACTACGAGCCCTCTGCCCCACGCATCTAACCAGCTCGCGTGGTTCACCGGTTCCACCGACGTCACCCTTAGATAGAGTTATTCAGTCGA
TACAGAGATGCGCTTAAAGTGGGGGGTGTGCTGTCCCTATTGGGCTGGGCCCTTCCCCATAAGGCCCCACCGTCGGGGCATAAGCGCCCTCTTGCTACCC
ATATGCAAGGCGCCGTCTTAGCCTTGCCTTCCCAGGATCGCTCCCACACCTGTCACGTTCGTGATCGGCCTCCTCAACTGTGTATCGATCGAAAGGCAGG
GCGGCAGAGCCCCCAACCGACGGGAGTAGTTACGTCCAGTATGTCCCCCCTCGATTCCCGACATGCTATGATACCCCAGGGTGGGTAGGAGCGGGTCGAG
TCCGTATCACCGCGGAACAACTGCAGCGTCCGGATCTGATCTATCTACTCGGCAATTCATCCGGTGACTTCACGGTCGCCAAAGAAGCCCCAAGAAGCAT
CAAACATTTCCGATGAGATCCATGGAGCTATTCTGAGATAGCAAGCACTAGCTCCCAGTGCGACTTCATAAAAAGCAATCAAAGATAAGATCGAAGAAAA
TGAAACGCACGTGGTGGTCATTATAGCGGTTCCTTCAGATCCTAGAAAACATCCGAAAAAAAC