« Back to Aegilops tauschii search


Detailed information on CNT30439196


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU35|ERLL1_ARATH, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691960Aegilops tauschiiOryza sativa17.5621.388.8972forward
CNT30677994Aegilops tauschiiSetaria viridis17.5620.7588.8972forward
CNT30187285Aegilops tauschiiSecale cereale20.7322.9795.2985forward
CNT30684877Aegilops tauschiiTriticum urartu52.6834.0796.76216forward
CNT30106366Aegilops tauschiiOryza longistaminata17.5623.2386.1172forward

Expression of CNT30439196

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MKQITYTTSYKALVNGWIVDHACTHVRTYSGCLHAVDDGSLGSSLLAGALEAGGDVLAAVVDEEAEVDGHVEHVGAHPQLQRVDGAPRAPT*

>peptide 2 (64 aa)
MGTLSTLAHTPSFSASMGHRARPPDPPPPDPPLPDPPPPLPPPPDPPPPLPPPPEPPPPLPPLPP

>peptide 3 (30 aa)
MPACSGRWISRVFSSSGGTGSRRGRSCRSS*

Sequence

>CNT30439196
GCGATGATAAATTATGAAGCAAATAACGTATACGACTAGCTATAAAGCACTAGTCAATGGATGGATTGTAGATCATGCATGCACGCACGTACGTACGTAT
AGTGGATGCCTGCATGCAGTGGACGATGGATCTCTCGGGTCTTCTCTTCTAGCGGGGGCACTGGAAGCCGGAGGGGACGTTCTTGCCGCAGTAGTTGACG
AGGAGGCTGAGGTCGATGGGCACGTTGAGCACGTTGGCGCACACCCCCAGCTTCAGCGCGTCGATGGGGCACCGCGCGCGCCCACCTGATCCGCCTCCTC
CCGATCCGCCACTGCCGGACCCGCCGCCGCCGCTGCCGCCTCCTCCTGATCCGCCTCCGCCGCTACCGCCTCCTCCAGAACCGCCTCCACCGCTGCCTCC
ACTGCCCCCG