Detailed information on CNT3043899


BLAST search results

BLAST vs Swiss-Prot:
sp|P55737|HS902_ARATH, E-value = 9e-25

BLAST vs NONCODE:
NONMTRT001412, E-value = 5e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379122Prunus dulcisManihot esculenta34.4238.5888.17169forward
CNT30631057Prunus dulcisVigna unguiculata33.219.1584.05163forward
CNT3094874Prunus dulcisSolanum tuberosum33.420.0581.1164forward
CNT30510227Prunus dulcisSolanum lycopersicum33.414.0182.93164forward
CNT30704690Prunus dulcisPrunus avium74.7518.0694.28367forward

Expression of CNT3043899

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MEKKLLLGGGLERRRGGLFQTHHLINFLHLAALSISISVLQWGHLSITVNSIVVNAQSKLQHSVDPVAEGVGVIKAEPRGKRLSLRH*

>peptide 2 (32 aa)
GDNSSKCINKKKVIIISDNKNSSNHPKISKIN*

>peptide 3 (35 aa)
MGASQHHRQQHRRQCSIQASTFCGSCCRRCWGHQG*

>peptide 4 (37 aa)
MLNPSFNILWILLPKVLGSSRLNPEANVSVSAIDVVY*

Sequence

>CNT3043899
TAGGAGACAATAGTTCCAAATGCATTAACAAAAAGAAGGTAATTATAATATCCGATAACAAAAACAGCAGTAACCATCCCAAAATATCCAAAATTAACTA
AAGAAAGTAAGAAAATATAACATCACTAATATGGAGAAAAAACTACTGCTTGGTGGTGGGTTGGAAAGAAGGAGGGGGGGTTTGTTTCAGACACATCACT
TAATCAACTTCCTCCATCTTGCTGCCCTCAGCATCAGCATCAGCGTCCTCCAATGGGGGCATCTCAGCATCACCGTCAACAGCATCGTCGTCAATGCTCA
ATCCAAGCTTCAACATTCTGTGGATCCTGTTGCCGAAGGTGTTGGGGTCATCAAGGCTGAACCCAGAGGCAAACGTCTCAGTCTCCGCCATTGATGTTGT
ATATTAGGGATTAAAGGAGATCTAGGGTTTTGGAGAAGCAGAGAGGTCGAAGACGACGTAAAAATGAAGACAGAGGAGGTAGTGAATATTT