Detailed information on CNT30438887


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676857Aegilops tauschiiSetaria viridis21.7413.749650forward
CNT30353505Aegilops tauschiiEragrostis tef22.616.594.2352forward
CNT30581942Aegilops tauschiiEchinochloa crusgalli20.4310.1195.7447forward
CNT30117853Aegilops tauschiiOryza nivara21.748.099650forward
CNT30558778Aegilops tauschiiPanicum hallii22.1712.9196.0851forward

Expression of CNT30438887

Peptides detected in this lncRNA

>peptide 1 (56 aa)
HVRHIRTLILFPGKIHTAHDAASRASHAADPSTADGGGRAINGQLTGWAPSRRRRR*

>peptide 2 (75 aa)
TYGTFVLSYFSPVKFTQHMMLHRAHRTQLIHQQPTAADGQSTASSQAGHPLGGAGDDGEQAERVEWATGVELVIKF

Sequence

>CNT30438887
CACGTACGGCACATTCGTACTCTCATACTTTTCCCCGGTAAAATTCACACAGCACATGATGCTGCATCGCGCGCATCGCACGCAGCTGATCCATCAACAG
CCGACGGCGGCGGACGGGCAATCAACGGCCAGCTCACAGGCTGGGCACCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGCCGAGCGGGTCGAATGGG
CCACCGGGGTGGAGCTTGTCATCAAATTCC