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Detailed information on CNT30438780


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQF7|RS16_ORYSJ, E-value = 4e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696918Aegilops tauschiiOryza sativa53.385.7787.38428forward
CNT30515426Aegilops tauschiiJuglans regia25.5315.682.93205forward
CNT3043803Aegilops tauschiiPrunus dulcis16.312581.68131forward
CNT30295032Aegilops tauschiiTriticum aestivum28.8944.4495.26232forward
CNT30391876Aegilops tauschiiTriticum turgidum27.910095.54224forward
CNT30562499Aegilops tauschiiActinidia chinensis10.3437.3985.5483forward
CNT3083687Aegilops tauschiiVigna radiata25.6521.6681.55206forward
CNT30555554Aegilops tauschiiOryza glaberrima56.4155.4586.75453forward
CNT30247768Aegilops tauschiiAvena sativa44.2158.3993.52355forward
CNT30663140Aegilops tauschiiTriticum dicoccoides71.3683.0490.05573forward
CNT30472632Aegilops tauschiiSaccharum spontaneum52.38.5988.57420forward
CNT30136796Aegilops tauschiiLolium perenne25.7830.3190.82207forward
CNT30721366Aegilops tauschiiTriticum spelta41.2264.494.86331forward
CNT30365247Aegilops tauschiiSorghum bicolor32.538.4488.51261forward
CNT30151249Aegilops tauschiiBrachypodium distachyon39.8561.4290.94320forward
CNT30104226Aegilops tauschiiOryza rufipogon45.0875.7387.29362forward
CNT30581659Aegilops tauschiiEchinochloa crusgalli23.0428.7387.57185forward
CNT30117820Aegilops tauschiiOryza nivara56.4158.0887.42453forward
CNT30176592Aegilops tauschiiVigna angularis25.6525.2883.5206forward

Expression of CNT30438780

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSMSLKRDLPASRIGSKALRRSISGRMSSMGAPLTLMRPRPGLQ*

>peptide 2 (36 aa)
MVSAAVCLVAVRAVVCLVAARVGVWGGGGEATKKTRD

Sequence

>CNT30438780
CACGCGCAAACAGGTCCAAGCAATTAAGAAAACTTTATCTGAACGTCCAGTCTCAAAATTAACATAAGATAAACATAGCATAATCCCTTTAACTAGGCAT
GAAGCAAAATGATATTGCACGGGCACCTCACAATCCATTTCATTGACCAAAAGATAGGAAACTACTAGCCGCAAAAGGTAGATAGATAAGTAGACAAGCA
GTACGCCACCACCGCCATACCCAAGAGGACTTCTCGCAGGAGATCAACGGTAAGACTTCTGGAAACGCGCGCGGGCGCCGCGACCGCCGAACTTCTTGGG
CTCGCAGCGGCGCGGGTCGGCGACGAGGAGCGTCCGGTCGTAGCGACCAAAGATCTCCTTCACCTCCTTCTTGGCCGCCTCGTCGACGTACTTCTGGTAG
TAGGCGACGAGCGACTTGGCGATGGCCTGGCGGATGGAGTAGATCTGGCTCGTCTTCCCGCCGCCGCGGACGCGAATCCGCATGTCGATGTCCTTGAAGC
GCGACCTACCGGCGAGCAGGATCGGCTCGAAGGCCTTGAGGCGGAGCATCTCGGGGCGGATGAGCTCGATGGGCGCGCCGTTGACCTTGATGAGGCCGCG
CCCGGGCTTGCAGTAGGCCACGGCGACGGCGGTCTTCTTCCGGCCGAAGCACTGGACAGTGCCAGGCGTCGGGCGAGTGAGAACGGCTGCCATGGTGTCT
GCGGCCGTGTGCTTGGTTGCTGTGAGGGCGGTGGTGTGCTTGGTTGCGGCGCGGGTCGGGGTTTGGGGTGGCGGTGGAGAGGCGACGAAGAAGACGAGAG
ATC