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Detailed information on CNT30438779


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 7e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697405Aegilops tauschiiOryza sativa30.4342.2991.67192forward
CNT30677012Aegilops tauschiiSetaria viridis30.4327.2386.46192forward
CNT30524410Aegilops tauschiiSetaria italica30.4324.5586.98192forward
CNT30297056Aegilops tauschiiTriticum aestivum54.2100100342forward
CNT30249379Aegilops tauschiiAvena sativa28.0544.5897.74177forward
CNT30662842Aegilops tauschiiTriticum dicoccoides85.196.0693.11537forward
CNT30465769Aegilops tauschiiSaccharum spontaneum31.2234.2686.8197forward
CNT30135675Aegilops tauschiiLolium perenne56.8994.7288.02359forward
CNT30353507Aegilops tauschiiEragrostis tef24.7212.2191.67156forward
CNT30365046Aegilops tauschiiSorghum bicolor31.2220.4686.8197forward
CNT30371307Aegilops tauschiiOryza glumipatula26.7815.692.9169forward
CNT30322408Aegilops tauschiiAsparagus officinalis23.1416.884.93146forward
CNT30151052Aegilops tauschiiBrachypodium distachyon18.8651.2995.8119forward
CNT30104243Aegilops tauschiiOryza rufipogon27.131.6792.98171forward
CNT30578126Aegilops tauschiiOryza barthii30.4322.891.67192forward
CNT30498372Aegilops tauschiiDigitaria exilis24.7232.8487.82156forward
CNT30117952Aegilops tauschiiOryza nivara26.6213.5292.86168forward
CNT3039554Aegilops tauschiiMarchantia polymorpha25.6744.2685.8162forward

Expression of CNT30438779

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MFQDTDQSVGDPVVLGASDEDDLGDDGEDQVDG

>peptide 2 (51 aa)
MKKPSMENMASRPFLISFTLSSAAWSGSVARPSGSNGPPGWSLSSNSCRRG*

>peptide 3 (50 aa)
MFLLPLIIYTYGTFVLSYFSPVKFTQHMMLHRAHRTQLIHQQPTAADGGR*

>peptide 4 (47 aa)
MGHRGGACHQIPAGEVDETVGQYKDAWLSCGNEYLCFRILTSPLVIL*

Sequence

>CNT30438779
AATTACTCAAGTAGCAGTGTCGCACCAGTTATCAAGCACAAGTTTCCAGCAAGAAAATAAAAAATCAAGCACAAGCTGAAGCAGTGGTCCGATACTCCCA
TCAGAAATCAGAACGATCATGTTTCTTCTGCCCTTGATAATTTACACGTACGGCACATTCGTACTCTCATACTTTTCCCCGGTAAAATTCACACAGCACA
TGATGCTGCATCGCGCGCATCGCACGCAGCTGATCCATCAACAGCCGACGGCGGCGGACGGGGGTCGCTGAGGTGCGCGCACAGGTTCTCAAAGGGGCCC
TCGCCGGTGACGTAGGCCTGGATGAAGAAGCCCAGCATGGAGAACATGGCCAGCCGTCCGTTCTTGATCTCCTTCACCTTGAGCAGCGCCGCCTGGTCGG
GGTCGGTGGCGAGGCCGAGCGGGTCGAATGGGCCACCGGGGTGGAGCTTGTCATCAAATTCCTGCCGGAGAGGTTGACGAAACCGTTGGTCAGTACAAGG
ACGCCTGGCTGAGCTGCGGCAACGAATATCTATGTTTCAGGATACTGACCAGTCCGTTGGTGATCCTGTAGTACTCGGCGCCTCCGACGAGGACGACCTC
GGCGACGACGGCGAGGATCAGGTTGATGGGG