Detailed information on CNT30438727


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673014Aegilops tauschiiSetaria viridis67.4138.4591.55213forward
CNT30520920Aegilops tauschiiSetaria italica83.5438.190.91264forward
CNT30629841Aegilops tauschiiVigna unguiculata20.2510.9489.0664forward
CNT30292897Aegilops tauschiiTriticum aestivum71.8438.5495.15227forward
CNT30222490Aegilops tauschiiHordeum vulgare31.6521.2897100forward
CNT30390478Aegilops tauschiiTriticum turgidum83.5422.1595.08264forward
CNT30555733Aegilops tauschiiOryza glaberrima29.116.4795.6592forward
CNT30249726Aegilops tauschiiAvena sativa57.5922.6992.31182forward
CNT30662078Aegilops tauschiiTriticum dicoccoides91.7710091.72290forward
CNT30454500Aegilops tauschiiSaccharum spontaneum27.8524.3189.7788forward
CNT30135064Aegilops tauschiiLolium perenne50.6328.0290160forward
CNT3014188Aegilops tauschiiZea mays68.6728.489.4217forward
CNT30683149Aegilops tauschiiTriticum urartu43.9931.3898.56139forward
CNT30720963Aegilops tauschiiTriticum spelta64.8736.894.63205forward
CNT30344811Aegilops tauschiiEragrostis tef58.2332.9292.93184forward
CNT30597198Aegilops tauschiiOryza meridionalis20.254.7896.8864forward
CNT30582414Aegilops tauschiiEchinochloa crusgalli62.0333.1189.8196forward
CNT30604850Aegilops tauschiiOryza punctata40.1913.0891.34127forward
CNT30556995Aegilops tauschiiPanicum hallii81.0136.4290.62256forward
CNT30551896Aegilops tauschiiOryza brachyantha72.1534.3992.54228forward

Expression of CNT30438727

Peptides detected in this lncRNA

>peptide 1 (52 aa)
VCSLSASFLRPVSVRAGAVEGAPSLKEATPYMVRQTLRMETRPMAPRVPAWP*

>peptide 2 (90 aa)
GLQLVGLLLAAGEREGGRGGGRALVEGGDAVHGEADAEDGDEADGAEGSRLAVNWRVAERAGEREGADEEVAVGEADLDATEERADGGCR*

Sequence

>CNT30438727
CGGTCTGCAGCTTGTCGGCCTCCTTCTTGCGGCCGGTGAGCGTGAGGGCGGGCGCGGTGGAGGGCGCGCCCTCGTTGAAGGAGGCGACGCCGTACATGGT
GAGGCAGACGCTGAGGATGGAGACGAGGCCGATGGCGCCGAGGGTTCCCGCCTGGCCGTGAATTGGCGTGTTGCGGAGCGGGCCGGTGAGCGCGAAGGGG
CCGACGAGGAGGTAGCCGTGGGCGAGGCCGACCTCGATGCCACGGAGGAGCGGGCTGACGGCGGCTGCCGATGAATGGGTCGCCGTTGATGGGCTGGACC
ACCTGGTACGTCCCCT