Detailed information on CNT3043869


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMTRT001412, E-value = 7e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379140Prunus dulcisManihot esculenta28.0616.8888.03142forward
CNT30367015Prunus dulcisSorghum bicolor22.7320.582.61115forward
CNT30371008Prunus dulcisOryza glumipatula13.4427.5388.2468reverse complement
CNT30107294Prunus dulcisOryza longistaminata13.442588.2468forward
CNT30103405Prunus dulcisOryza rufipogon13.4432.3888.2468reverse complement

Expression of CNT3043869

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGASQHHRQQHRRQCSIQASTFCGSCCRRC*

>peptide 2 (92 aa)
MEKKLLLGGGLERRRGGLFQTHHLINFLHLAALSISISVLQWGHLSITVNSIVVNAQSKLQHSVDPVAEGVDDQTQKLVDLGLEGKRLSLRH*

>peptide 3 (42 aa)
MLNPSFNILWILLPKVLMIKLRSWLISAWKANVSVSAIDVVY*

>peptide 4 (32 aa)
GDNSSKCINKKKVIIISDNKNSSNHPKISKIN*

Sequence

>CNT3043869
TAGGAGACAATAGTTCCAAATGCATTAACAAAAAGAAGGTAATTATAATATCCGATAACAAAAACAGCAGTAACCATCCCAAAATATCCAAAATTAACTA
AAGAAAGTAAGAAAATATAACATCACTAATATGGAGAAAAAACTACTGCTTGGTGGTGGGTTGGAAAGAAGGAGGGGGGGTTTGTTTCAGACACATCACT
TAATCAACTTCCTCCATCTTGCTGCCCTCAGCATCAGCATCAGCGTCCTCCAATGGGGGCATCTCAGCATCACCGTCAACAGCATCGTCGTCAATGCTCA
ATCCAAGCTTCAACATTCTGTGGATCCTGTTGCCGAAGGTGTTGATGATCAAACTCAGAAGCTGGTTGATCTCGGCCTGGAAGGCAAACGTCTCAGTCTC
CGCCATTGATGTTGTATATTAGGGATTAAAGGAGATCTAGGGTTTTGGAGAAGCAGAGAGGTCGAAGACGACGTAAAAATGAAGACAGAGGAGGTAGTGA
ATATTT