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Detailed information on CNT30438687


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520803Aegilops tauschiiSetaria italica24.4918.9689.2984forward
CNT30190430Aegilops tauschiiSecale cereale88.0553.6494.37302forward
CNT30293970Aegilops tauschiiTriticum aestivum10053.18100343forward
CNT30222858Aegilops tauschiiHordeum vulgare100.2967.8591.86344forward
CNT30390514Aegilops tauschiiTriticum turgidum100.5863.1995.94345forward
CNT30255378Aegilops tauschiiAvena sativa24.4919.7685.7184forward
CNT30149122Aegilops tauschiiBrachypodium distachyon27.718.8189.4795forward

Expression of CNT30438687

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MMHARHGACMIDDGSSSCSRSSRSWCRTCTGRCRSRSFLRSKTSSRLGWSFGDGEALNGYELRVC

>peptide 2 (45 aa)
MMDLAAAAGAAAAGAALALGGAAAAVSSAARHLRGWVGASEMERL*

Sequence

>CNT30438687
TATAGTTAATCAAGGGAGGTTTTATTTAGGGGGGCCTGTTTACAATCATGGCATGGCACCTGACTGCTGATGCAGGTCAGGTGCGTACATAAAGGCCCTC
GATCAGGTTGCGGTTACATGGTATGGTAGTAGTAGATCGATATGATCGATGATGCACGCACGGCACGGTGCATGCATGATCGATGATGGATCTAGCAGCT
GCAGCAGGAGCAGCCGCAGCTGGTGCCGCACTTGCACTGGGCGGTGCCGCAGCCGCAGTTTCCTCCGCAGCAAGACATCTTCGAGGTTGGGTTGGAGCTT
CGGAGATGGAGAGGCTTTGAATGGCTATGAGCTTCGTGTGTGC