Detailed information on CNT3043839


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515203Prunus dulcisJuglans regia21.1310.6798.2156forward
CNT3070099Prunus dulcisQuercus suber42.6420.2988.5113forward
CNT30401878Prunus dulcisBeta vulgaris20.758.6298.1855forward
CNT30628611Prunus dulcisVigna unguiculata21.1311.4396.4356forward
CNT30561111Prunus dulcisActinidia chinensis21.1313.5696.4356forward
CNT30543139Prunus dulcisBrassica napus21.518.6598.2557forward
CNT30233654Prunus dulcisBrassica oleracea21.5111.8510057forward
CNT3073498Prunus dulcisBrassica juncea21.519.2298.2557forward
CNT30609407Prunus dulcisGossypium raimondii209.1998.1153forward
CNT30112128Prunus dulcisFicus carica20.7510.0510055forward
CNT30724430Prunus dulcisLupinus angustifolius208.3396.2353forward

Expression of CNT3043839

Peptides detected in this lncRNA

>peptide 1 (32 aa)
ISKPSQDTITSFLRSLLCRTRVLKANFVSSSP*

>peptide 2 (55 aa)
MRAKWKKKRMRRLKRKRMRRPRKWKAGRLIAQCSRVVGSPGCPLRTSTITILHSQK

Sequence

>CNT3043839
AATATCCAAACCCTCTCAAGATACGATAACTTCTTTTCTCCGCAGCCTTCTTTGCAGAACTAGGGTTTTGAAAGCGAACTTCGTTTCATCGTCACCATGA
GAGCCAAGTGGAAGAAGAAGCGCATGAGGAGGTTGAAGAGGAAGCGCATGAGGAGGCCACGGAAGTGGAAAGCTGGAAGACTCATTGCTCAGTGCAGCAG
AGTTGTAGGGAGCCCAGGTTGCCCCTTGAGGACCAGCACAATAACAATTCTCCATAGCCAAAAAC