Detailed information on CNT30438202


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673415Aegilops tauschiiSetaria viridis6.612110042forward
CNT30193719Aegilops tauschiiSecale cereale44.8885.3390.53285forward
CNT30291271Aegilops tauschiiTriticum aestivum48.585.0895.13308forward
CNT30222985Aegilops tauschiiHordeum vulgare52.9171.7990.18336forward
CNT30388347Aegilops tauschiiTriticum turgidum48.1963.4992.16306forward
CNT30661953Aegilops tauschiiTriticum dicoccoides51.0255.8692.28324forward
CNT30681819Aegilops tauschiiTriticum urartu80.6385.3391.21512forward

Expression of CNT30438202

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MHGSAPALLMLAGAYIHTKTLDQVALHMVVDGPIDHRYDARARQVHAWSMIDDQ*

>peptide 2 (51 aa)
MYRLNHGRFYLGVGLHAWECTCSAHAGRCLHTYKDPRPGGVTHGSRWTDRS*

>peptide 3 (47 aa)
MINDLAAAAGAAAAGAALALGAAAAAASSAARHLRGCLGLDGGFDWC*

>peptide 4 (31 aa)
MHGMAPALLMQAGAYIHTKTLDQAALHGSRW*

>peptide 5 (59 aa)
MINDLAAAAGAAAAGAALALAKPREILFRGLHAWHGTRSAHAGRCVHTYKDPRSGSVTW*

>peptide 6 (31 aa)
MAWHPLCSCRQVRTYIQRPSIRQRYMVVDGR*

Sequence

>CNT30438202
CGCAAGTTGATAGTAAACACGGGCCAGAAGCTGGTCTATAACACAAACACATGTATAGGTTAAACCACGGGAGATTTTATTTAGGGGTCGGTTTACATGC
ATGGGAGTGCACCTGCTCTGCTCATGCTGGCAGGTGCTTACATACATACAAAGACCCTCGACCAGGTGGCGTTACACATGGTAGTAGATGGACCGATCGA
TCATAGATATGATGCACGCGCGCGGCAGGTGCATGCATGGTCGATGATCGATGATCAATGATCTAGCAGCTGCAGCAGGAGCAGCCGCAGCTGGTGCCGC
ACTTGCACTGGCAAAACCACGGGAGATTTTATTTAGGGGTTTACATGCATGGCATGGCACCCGCTCTGCTCATGCAGGCAGGTGCGTACATACATACAAA
GACCCTCGATCAGGCAGCGTTACATGGTAGTAGATGGTAGATAGATCATAGATATGATGCACGCGGCGCATGCATGATCAATGATCTAGCAGCTGCAGCA
GGAGCAGCCGCAGCTGGTGCCGCACTTGCACTGGGCGCTGCCGCAGCCGCAGCTTCCTCCGCAGCAAGACATCTTCGAGGTTGCTTGGGATTGGATGGAG
GCTTTGATTGGTGTTGACTAGGAGCTTCCTGTGTG