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Detailed information on CNT30438170


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30177652Aegilops tauschiiSecale cereale71.8128.6595.99349forward
CNT30300734Aegilops tauschiiTriticum aestivum25.112.9698.36122forward

Expression of CNT30438170

Peptides detected in this lncRNA

>peptide 1 (56 aa)
FKDAKALEIALLLSYVRRPASTMMWTICSTASPSIASTQSLSLLREKRDLEKKSFH*

>peptide 2 (38 aa)
MNGCNIITLHVALKMYQNWARPKIACGVMCCNVNGIIIF

>peptide 3 (38 aa)
MFGCCEVPDRLVLFFSRSWSISAAPCKCSSVRFLIHLL*

>peptide 4 (64 aa)
QGRQGPGDRAAALVRATSSVNDDVDHMFNCIPIHCIDTKPVIAKGEAGLGEEIFPLSRLHVWLL*

Sequence

>CNT30438170
TTCAAGGACGCCAAGGCCCTGGAGATCGCGCTGCTGCTCTCGTACGTGCGACGTCCAGCGTCAACGATGATGTGGACCATATGTTCAACTGCATCCCCAT
CCATTGCATCGACACAAAGCCTGTCATTGCTAAGGGAGAAGCGGGACTTGGAGAAGAAATCTTTCCATTAAGCAGATTACATGTTTGGTTGCTGTGAAGT
ACCAGATAGGCTAGTTCTATTTTTTTCACGATCCTGGAGTATTTCAGCAGCTCCATGCAAATGCAGTAGCGTTAGGTTTCTGATTCACCTTTTGTAAAAA
CTTAGTTAGCCCGCAGTCAGTCAGTAGTAGCTCAGCCAGCCAGCCAGCCTCAAATAGTATTGCTGGAATGAATGGTTGTAATATAATAACATTGCACGTT
GCTTTGAAAATGTATCAGAACTGGGCTAGGCCCAAGATAGCTTGTGGTGTGATGTGTTGTAATGTCAATGGCATAATAATTTTTTT