Detailed information on CNT30438073


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Aegilops tauschiiOryza sativa55.1693.3598.66449forward
CNT30671914Aegilops tauschiiSetaria viridis83.5440.8999.26680forward
CNT30156864Aegilops tauschiiPistacia vera42.8723.7395.7349reverse complement
CNT30234026Aegilops tauschiiBrassica oleracea41.0384.1395.81334reverse complement
CNT30258698Aegilops tauschiiAvena sativa51.651.9898.81420reverse complement
CNT30550626Aegilops tauschiiOryza brachyantha37.1103.0791.39302reverse complement

Expression of CNT30438073

Peptides detected in this lncRNA

>peptide 1 (34 aa)
AYLSHDGSARKWEQRLKPLGVGAFQRWKIYVLPI*

>peptide 2 (33 aa)
MMSMARGRALNGLGWPPFRFTNPRETPNTGRHP*

>peptide 3 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMSQGSSDSPKRRDLESSFFKCQ*

>peptide 4 (45 aa)
MSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRNPRKGCRPMGTRK*

Sequence

>CNT30438073
GCTTACCTTTCGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTTACGTTCTTCCTA
TTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTTCGCGAAATC
TATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAACCCCAGGGAAACTCCGAAT
ACAGGCCGTCATCCTTAGTACAGACAGACTGATTGGGTGCTAAGATCCAAAGTTGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCA
CTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCA
TGGCACCGAAAATGTCTCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCAGCTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGG
GGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAG
GCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTT
TGACTACTGAACCA