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Detailed information on CNT30438033


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SZL8|FRS5_ARATH, E-value = 2e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186386Aegilops tauschiiSecale cereale14.5422.8885.71140reverse complement
CNT30283310Aegilops tauschiiTriticum aestivum100.2142.1693.68965forward
CNT30383022Aegilops tauschiiTriticum turgidum100.2141.4393.68965forward
CNT30655853Aegilops tauschiiTriticum dicoccoides25.8644.2393.57249forward
CNT30102269Aegilops tauschiiOryza rufipogon37.3824.1680.28360forward

Expression of CNT30438033

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MHYKTHMLSLHSQIPFLSLVLTFCCNHHLCFDLPLPHFCCHDLHNIKKYHILISSRTTHGVKVHTIFTVLVLVKPEKRLKIELFF*

>peptide 2 (34 aa)
MLKFPDTETSMTCICIIKLICYLFILKFHSYLWF*

>peptide 3 (29 aa)
MTRFWSNTRIIQYVNLGLLSFCNSSLRSQ*

>peptide 4 (57 aa)
MGFAWSFEFMIMSILKAAYNIFSISTYFDGHLCQTPNSCICSLPLALFLALVLETCL*

>peptide 5 (46 aa)
MVISARHPTLVSARFRWHCSLLLSLKPAFEHTNFFVRITFVEDLSC*

>peptide 6 (66 aa)
LRHTQGQPKVVADPLPVRWWHGGTVARAAGGRDSAGGWTITVEDANSMQAQQAKVLKNGTCISFLD*

>peptide 7 (66 aa)
MVAWWNCSACSRWPRFRGRLDDHSGRCELDASSTGKGIEEWHLYLLLGLTAYALIGDNFYNSFDQS*

Sequence

>CNT30438033
CTCCGGCACACTCAAGGCCAGCCGAAGGTTGTGGCTGACCCGCTCCCTGTGAGATGGTGGCATGGTGGAACTGTAGCGCGTGCAGCCGGTGGCCGAGATT
CCGCGGGAGGTTGGACGATCACAGTGGAAGATGCGAACTCGATGCAAGCTCAACAGGCAAAGGTATTGAAGAATGGCACCTGTATCTCCTTCTTGGATTG
ACTGCATACGCTTTGATCGGAGATAATTTTTATAATTCTTTTGACCAAAGCTAAGACATCGCCTACCCCCTGCTTGTCTACTCATCACTTCATGACCAGA
TTTTGGTCTAATACCAGAATCATTCAATATGTCAATCTGGGCCTTCTGAGCTTCTGTAATTCTTCTTTGAGATCGCAGTAGATGGGCTTTGCTTGGAGTT
TCGAGTTCATGATTATGAGCATCCTCAAAGCTGCTTACAACATATTTTCCATTAGCACTTATTTTGATGGTCATCTCTGCCAGACACCCAACTCTTGTAT
CTGCTCGCTTCCGCTGGCATTGTTCCTTGCTCTTGTCCTTGAAACCTGCCTTTGAGCATACAAATTTCTTTGTTCGAATAACATTCGTTGAGGATTTATC
ATGCTAAAATTTCCTGACACCGAAACCAGTATGACCTGCATATGCATTATAAAACTCATATGCTATCTCTTCATTCTCAAATTCCATTCCTATCTCTGGT
TTTAACCTTTTGCTGTAATCATCATCTGTGTTTCGACCTGCCTCTCCCACATTTTTGTTGTCATGATCTACACAACATAAAAAAATATCATATACTAATT
AGTTCACGGACGACACATGGAGTAAAAGTTCACACGATATTCACAGTCCTGGTTTTAGTGAAACCTGAAAAGCGCTTAAAGATAGAGCTATTTTTTTGAA
AACAACACATGGTATTCACGGGAGCATTAGCTAAATATTGATCTTTTTCTTTGATATAGTAAT