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Detailed information on CNT3043803


BLAST search results

BLAST vs Swiss-Prot:
sp|P46293|RS16_GOSHI, E-value = 6e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696918Prunus dulcisOryza sativa25.3826.6581.95133forward
CNT30515426Prunus dulcisJuglans regia26.7210.6590.71140forward
CNT30615807Prunus dulcisSesamum indicum15.2736.5383.7580forward
CNT30568235Prunus dulcisActinidia chinensis19.2733.7888.12101forward
CNT3083687Prunus dulcisVigna radiata25.3813.9985.71133forward
CNT30555324Prunus dulcisOryza glaberrima26.3437.681.88138forward
CNT30438780Prunus dulcisAegilops tauschii2516.3181.68131forward
CNT30472632Prunus dulcisSaccharum spontaneum25.382.7281.95133forward
CNT30232050Prunus dulcisAnanas comosus26.5312.283.45139forward
CNT30625853Prunus dulcisDaucus carota24.439.9780.47128forward
CNT30721366Prunus dulcisTriticum spelta2525.4980.92131forward
CNT30620437Prunus dulcisCajanus cajan2518.3790.08131forward
CNT30120766Prunus dulcisCitrus clementina24.4323.6689.06128forward
CNT30151249Prunus dulcisBrachypodium distachyon25.5725.7281.34134forward
CNT30104226Prunus dulcisOryza rufipogon25.3827.8281.95133forward
CNT30118078Prunus dulcisOryza nivara25.3821.1881.95133forward
CNT30176592Prunus dulcisVigna angularis25.3816.3285.71133forward

Expression of CNT3043803

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MITFQTPTYFKNYRVSMIKILRNYKIPINIQLLKTKAITLKP*

Sequence

>CNT3043803
AACCACAACACAGTAATTAACCGAAATATGTCGTAATTCATAGAAATATGATAACATTTCAAACTCCAACATACTTTAAAAACTACAGAGTTTCCATGAT
CAAAATTCTGAGAAATTATAAAATACCAATTAACATCCAACTCCTTAAAACAAAAGCCATAACCTTGAAACCATAAACAAAAGCCAAAACGACGACGCAA
AACCTGTCCAGCTTTTGCTTTCCCCAAATCAACGGTAAGACTTCTGGAACCTAGCACGAGCACCACGACCACCGAACTTCTTGGGCTCGTAGGCCTTGAA
GCGGAGGATCTCCGGCTCGACGAGCTCGATTGGGCAGCCATTGATCTTGATCAAGCCTCGCCCACGCTTGCAGTAGGTCACGGCCACCGCGGTTTTCTTG
CGGCCGAAGCACTGCACTGACTCTATTGCAGGAGCCGCCATTGCTAGGGTTTGGATTGTGCTATCTGAATCGCGAAATGAAAAACCCTAGCCCTAGTGGA
AGTGTTTAGTCCCAAGTTGATACC