« Back to Aegilops tauschii search


Detailed information on CNT30437984


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 2e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30182368Aegilops tauschiiSecale cereale10018.6499.47378forward
CNT30299594Aegilops tauschiiTriticum aestivum1005099.47378forward
CNT30390630Aegilops tauschiiTriticum turgidum10058.2499.47378forward
CNT30467405Aegilops tauschiiSaccharum spontaneum10023.3299.21378forward
CNT30210175Aegilops tauschiiHelianthus annuus69.8470.2190.53264forward
CNT30427311Aegilops tauschiiPapaver somniferum75.667.7791.26286forward
CNT3056795Aegilops tauschiiAmborella trichopoda69.5849.4492.02263forward
CNT30577102Aegilops tauschiiOryza barthii57.6796.0498.62218forward
CNT30115468Aegilops tauschiiOryza nivara97.6210.6998.92369forward

Expression of CNT30437984

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKDDLESTQEDRESHIREKVTNGVKPSNIAKA*

>peptide 2 (41 aa)
MELNQVTLQRHNDSRIHFEVDLFARPIVGMCTRYHKGPISQ*

>peptide 3 (34 aa)
MIVGSTLKLTYSLGQSSECVRDTIRAQYLNSTLV*

>peptide 4 (33 aa)
KEEKELGVGAYITGSLLTKPSWQAPTVLLLLLT*

Sequence

>CNT30437984
GAAAGAAGAGAAAGAACTGGGAGTTGGCGCCTACATAACAGGTAGCTTGCTTACCAAGCCGTCCTGGCAAGCTCCTACAGTTCTCTTATTACTCTTGACT
TGACTTATTAATAAGAAAACTACTCACTAACAAAATGAAAGACGATCTAGAATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTCACAAAT
GGAGTTAAACCAAGTAACATTGCAAAGGCATAATGATAGTAGGATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATCGTCGGAATGTGTACGAGATAC
CATAAGGGCCCAATATCTCAATAGCACCCTTGTCTAAAGCTTCGAATGAGACTGAATATCTGAAACGCAGGAACGATC