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Detailed information on CNT30437818


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523218Aegilops tauschiiSetaria italica45.548.1796.2263forward
CNT30546681Aegilops tauschiiIpomoea triloba37.0245.5383.64214forward
CNT3042757Aegilops tauschiiPrunus dulcis43.4341.4283.27251forward
CNT30386576Aegilops tauschiiTriticum turgidum45.3344.7196.56262forward
CNT30450830Aegilops tauschiiSaccharum spontaneum45.6731.8897.73264forward
CNT30325970Aegilops tauschiiAsparagus officinalis31.8326.6784.24184forward
CNT30101647Aegilops tauschiiOryza rufipogon42.3926.2996.33245forward

Expression of CNT30437818

Peptides detected in this lncRNA

>peptide 1 (77 aa)
QNSIVISIIHNWRTVLLTLEPYNSANTVFAHQAQNPDQLQISPLLHFLDREPWLVRQGQPAPRLFSRRSRTGCGPGA*

>peptide 2 (56 aa)
MSPEMRFTPPLRASLRIAGLVMPWMLSRRTLRWRFAPPLPSPLPPLPRPDMAACSE*

Sequence

>CNT30437818
GCAGAACAGCATCGTCATTAGCATAATTCATAACTGGAGAACAGTTTTGTTAACTCTCGAACCATATAACTCGGCAAACACAGTATTTGCCCATCAGGCA
CAGAACCCAGATCAACTACAGATTTCTCCTCTTCTCCACTTTCTTGACCGCGAGCCATGGCTGGTGCGCCAGGGCCAGCCAGCGCCGCGGCTCTTCAGCC
GCCGAAGCCGTACAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCG
TCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCTTCACGCCGCCCCTCCGGGCCAGCCTCC
GGATCGCCGGCTTGGTGATGCCCTGGATGTTGTCGCGCAGGACCTTGCGGTGGCGCTTCGCGCCGCCCTTGCCGAGCCCCTTGCCGCCCTTGCCCCGCCC
CGACATGGCTGCCTGCTCCGAGTAGCTTGAGAGAAAAGGGGATTTGGGGGTTTTTGAGCGGGGATTGGTGGGTGGAAG