Detailed information on CNT3043772


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30511953Prunus dulcisSolanum lycopersicum4.362090.251forward

Expression of CNT3043772

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSKTQVGLRDFGAIGRCDGQSGKAMGLRR*

>peptide 2 (47 aa)
WANLGLAFVQRSLWSVPTPTTPKLQPTIHFNNYPTNYSFLETQQLSC*

>peptide 3 (35 aa)
VGQPWSCICTKIFMVCSHTHNSKTSTNYSFQQLSN*

>peptide 4 (56 aa)
MSFFFFFPIYFMFYVESTSIKKRIPQMSRRQITDFLKISLTEGTNCRFFATLSMYS*

>peptide 5 (49 aa)
MGNRERQWVFVDEQELADEGDEQEKRLNSNFDEDVGQTLAQINPERERR*

>peptide 6 (64 aa)
RGPTLVLHLYKDLYGLFPHPQLQNFNQLFISTTIQLTIHFWKLSNYLAKSSTQAFEFPLDLVWN*

>peptide 7 (57 aa)
MNKNLQTKGTNKRRDSIPTLTKTLAKRWPRSTQREREDEFFFFFSHLFYVLCGVHVN*

Sequence

>CNT3043772
CGTGGGCCAACCTTGGTCTTGCATTTGTACAAAGATCTTTATGGTCTGTTCCCACACCCACAACTCCAAAACTTCAACCAACTATTCATTTCAACAACTA
TCCAACTAACTATTCATTTCTGGAAACTCAGCAACTATCTTGCTAAAAGCTCAACTCAGGCCTTTGAATTTCCACTTGACTTGGTTTGGAATTAAAACCA
CTTGGCTTGGCTTGAATTTGATGACCACATCCAAACACCAACACAGCCCAACCCTCAAATCCCTAACTCCTGCAACTTTAGACTTTGAGAACTTGGTCAC
GTTTTGAAAAACAATTGGTATGGTTTCAGATTGATAGAAACCATAGATTCGCATCGCCTATTTGCTGAAAGCACAAATAGAATTGCTGATCTGTATTGCT
TGAATGAAGACACCCGATCGGCCCGACTTTCCCAAATGCCCACCACAGGCCCTGCTCATTTCCGAGTCTATTTTTTCAAGGGTGTGATTTTGATTCCTCC
ATATTAGTCCAAATGGTTGAACTAAAATGTTAGGCCCTCATTGTTACTCTTTTATTAAATCTCAATCTCTTTAAACCCAACAACAAATTCAAGTGAGAGA
AATATTGAATAACGGAGGTGGAACTTACAGAGGCACGCAACAGATCTGGGTATGGGGCTTGGTCGATGTCGAAAACCCAGGTAGGGTTGAGAGATTTCGG
GGCGATCGGGAGGTGCGATGGGCAATCGGGAAAGGCAATGGGTCTTCGTCGATGAACAAGAACTTGCAGACGAAGGGGACGAACAAGAGAAGAGACTCAA
TTCCAACTTTGACGAAGACGTTGGCCAAACGTTGGCCCAGATCAACCCAGAGAGAGAGAGAAGATGAGTTTTTTTTTTTTTTTTCCCATTTATTTTATGT
TTTATGTGGAGTCCACGTCAATTAAAAAAAGGATCCCACAAATGTCACGTAGGCAGATAACGGATTTTCTGAAGATCTCGTTAACGGAGGGGACAAATTG
TAGGTTTTTCGCGACGTTGAGTATGTACTCATAAATGTCCCCAAAATCGGGTATGCACTCGTAAATGACCCTATAGGTTGGGGAGTTTACTGTAATTTGT
CCTTTTTGTGTGTGTAAACTATATTATATTTTTTGTATTTTTGTTTTAATAAATTCTATTCCCAAAAAA