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Detailed information on CNT30437582


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672633Aegilops tauschiiSetaria viridis35.1536.1491.38116forward
CNT30520857Aegilops tauschiiSetaria italica35.1512.2991.38116forward
CNT30639966Aegilops tauschiiNymphaea colorata32.127.0683.02106forward
CNT30534100Aegilops tauschiiEucalyptus grandis31.5214.2582.69104forward
CNT30182270Aegilops tauschiiSecale cereale55.4533.1592.35183forward
CNT30294278Aegilops tauschiiTriticum aestivum49.3937.82100163forward
CNT30222283Aegilops tauschiiHordeum vulgare36.6728.8195.87121forward
CNT30564216Aegilops tauschiiActinidia chinensis36.6754.2684.3121forward
CNT3084712Aegilops tauschiiVigna radiata36.0642.0583.19119forward
CNT30261201Aegilops tauschiiBrassica rapa34.2412.7382.3113forward
CNT304588Aegilops tauschiiZea mays35.158.9993.1116forward
CNT30610860Aegilops tauschiiGossypium raimondii19.0921.3685.7163forward
CNT30129085Aegilops tauschiiCorymbia citriodora31.529.8884.62104forward
CNT30319122Aegilops tauschiiAsparagus officinalis32.427.2388.79107forward
CNT30582394Aegilops tauschiiEchinochloa crusgalli35.1531.191.38116forward
CNT30556884Aegilops tauschiiPanicum hallii35.1515.9893.1116forward
CNT30551919Aegilops tauschiiOryza brachyantha25.455.3991.6784forward

Expression of CNT30437582

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MGGRARRGGSRSGLTAVRYAGRLERYHATRGLDVTGVSRLPMNGSPLMGW

Sequence

>CNT30437582
CAATTCGCATGTTATAGTATCGTAGTATCATCGATCCATGCAAAGATTGTGAGGAATACGTAAGTTCATTTATACATAGACTCTTTCAACCAACCACCAA
GAAGAGATCGATCACATCATCTGCAGTTGTGCACCCATCGTACATGCATGCCAATAATAAATAATCTACTTGAAGAAGTATGGGAGGTCGAGCACGTAGA
GGAGGAAGTAGGAGCGGGCTGACGGCGGTGCGGTACGCGGGAAGGTTGGAGAGGTACCACGCGACGAGGGGGCTGGACGTGACGGGCGTCTCCAGGCTGC
CGATGAATGGGTCGCCGTTGATGGGCTGGA