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Detailed information on CNT30437581


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30709610Aegilops tauschiiGlycine max20.335.5890.3262forward
CNT30190568Aegilops tauschiiSecale cereale808.5693.44244reverse complement
CNT30292481Aegilops tauschiiTriticum aestivum63.6138.5796.91194forward
CNT30389136Aegilops tauschiiTriticum turgidum65.910096.02201forward
CNT30249088Aegilops tauschiiAvena sativa47.8727.1481.51146forward
CNT30661738Aegilops tauschiiTriticum dicoccoides91.896.8995.36280forward
CNT30134646Aegilops tauschiiLolium perenne37.753.2486.09115forward
CNT304540Aegilops tauschiiZea mays206.2488.5261forward
CNT30682462Aegilops tauschiiTriticum urartu87.2138.6196.62266forward
CNT30148832Aegilops tauschiiBrachypodium distachyon27.8716.5487.0685forward

Expression of CNT30437581

Peptides detected in this lncRNA

>peptide 1 (61 aa)
ALWVAVAETRRVAPAASASGYMLQPPQPLPHLQALPQPQLPPQQDIFEVAWDWMEALIGVD*

>peptide 2 (60 aa)
RLVGGGGRDEEGGAGGLSLRVHVAAAAAVAALAGAAAAAASSAARHLRGCLGLDGGFDWC*

>peptide 3 (56 aa)
PCGWRWQRRGGWRRRPQPPGTCCSRRSRCRTCRRCRSRSFLRSKTSSRLLGIGWRL*

Sequence

>CNT30437581
CGCCTTGTGGGTGGCGGTGGCAGAGACGAGGAGGGTGGCGCCGGCGGCCTCAGCCTCCGGGTACATGTTGCAGCCGCCGCAGCCGTTGCCGCACTTGCAG
GCGCTGCCGCAGCCGCAGCTTCCTCCGCAGCAAGACATCTTCGAGGTTGCTTGGGATTGGATGGAGGCTTTGATTGGTGTTGACTAGGAGCTTCCTGTGT
GCTTCTTGCTTGCTGGCTTGAGGAACAATGGCAGGCAGCGAGGGATATTTATAGGCGAGTGAGCATGAAGGGATGAGGAGGAGAAGATGAAGAAGGTGAT
GAGAG