Detailed information on CNT30437461


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30162096Aegilops tauschiiPistacia vera46.342.09100125forward
CNT3089926Aegilops tauschiiSolanum tuberosum93.711.4497.23253forward
CNT30219690Aegilops tauschiiHordeum vulgare10039.4299.63270forward
CNT30600960Aegilops tauschiiFraxinus excelsior65.1919.4984.09176reverse complement
CNT30713193Aegilops tauschiiMalus domestica golden51.116.6698.55138reverse complement
CNT30331625Aegilops tauschiiDioscorea rotundata86.6773.5897.01234reverse complement
CNT30151167Aegilops tauschiiBrachypodium distachyon24.4411.310066forward
CNT3099709Aegilops tauschiiOryza rufipogon94.0711.6799.61254reverse complement
CNT3039925Aegilops tauschiiMarchantia polymorpha98.8953.8394.76267reverse complement

Expression of CNT30437461

Peptides detected in this lncRNA

>peptide 1 (47 aa)
ATRNFATLGQLELLPPFTGASIQSLSHFSFRPSSTGQVSDSIHRVTT*

>peptide 2 (88 aa)
CDKEFRYLRTVRVTAAVYRGIHSKLITLLLPTFQHRAGVRLYTSCYHLAESCVFNKQSLPPGMCRFPNQKIGEHPFSRSYGVILPSSFD

Sequence

>CNT30437461
ATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCATCCATTCAAAGCTTATCACACTTCTCCTTCCGACCTTC
CAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTC
CTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACAT