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Detailed information on CNT30437038


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LTC5|ERF98_ARATH, E-value = 6e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693243Aegilops tauschiiOryza sativa25.1310.7394.82193forward
CNT30534348Aegilops tauschiiEucalyptus grandis21.0914.9984.57162forward
CNT3043670Aegilops tauschiiPrunus dulcis22.5319.1480.92173forward
CNT30585986Aegilops tauschiiMusa acuminata19.9222.5383.66153forward
CNT30254792Aegilops tauschiiAvena sativa11.7220.1386.6790forward
CNT30130161Aegilops tauschiiLolium perenne20.1818.4587.74155forward
CNT30229217Aegilops tauschiiAnanas comosus10.0332.2284.4277forward
CNT30338289Aegilops tauschiiEragrostis tef17.4548.5586.57134forward
CNT30366057Aegilops tauschiiSorghum bicolor8.227.5192.0663forward
CNT30101508Aegilops tauschiiOryza rufipogon12.8937.9385.8699forward
CNT30116505Aegilops tauschiiOryza nivara25.1326.3394.82193forward

Expression of CNT30437038

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MYTYLPLPIDGSILAIKRPINLLLVSTRHSSKL*

>peptide 2 (33 aa)
MCFILPASPCKKRTHAIYVHLLTLTHRWIDPGN*

>peptide 3 (72 aa)
MAGIARLRSSAGGGAGAAAAGAAGAAAGVSRDEDSTVLLLGLTASALGGGSGTWAKAATVPTGKLVLALGPR*

>peptide 4 (42 aa)
MDVFHPTCLPMQKTHARDLCTPTYPYPSMDRSWQLNGRLTSY*

Sequence

>CNT30437038
CTCTACTACTGGCTTCTTCCTTTTTATCTTTTTTTCCCTTGCTTTTAAGGAAATTGTAAGTAACATTGGGAGCAGATAGATGGATGTGTTTCATCCTACC
TGCCTCCCCATGCAAAAAACGCACGCACGCGATCTATGTACACCTACTTACCCTTACCCATCGATGGATCGATCCTGGCAATTAAACGGCCGATTAACCT
CTTACTAGTAAGTACACGCCATTCTTCTAAACTTTAAATTCTACCACGAGAGCGCTTTGCTTTACTTCCGGGCCGCGTCGTCATCGGGCGACCGAGATCG
GTCCATCTCCTACGCCATCTCCACCGGCGGCGGCAGGTTCAGGAACAGGAACGGCTGCGCCGCCACCATGGCCGGCATCGCCAGGCTCAGGTCGAGCGCC
GGCGGGGGCGCGGGGGCAGCAGCAGCAGGAGCGGCGGGCGCCGCGGCCGGCGTGTCCCGGGACGAAGACTCGACGGTGCTGCTGCTGGGGCTGACGGCCA
GCGCCTTGGGCGGCGGGAGCGGGACGTGGGCGAAGGCGGCGACGGTGCCGACGGGGAAGTTGGTCTTGGCCTTGGGCCCGCGGTAGTGGAGCGCGGCGGC
GTCGTAGGCGCGGGCCGCGGCCTCGGCGGTGTCGAAGGTGCCGAGCCAGACGCGGGCCTTCCTGGCCGGGTCGCGGATCTCCGCCGCGTACCTGCCCCAC
GGCCGCTTGCGCACGCCGCGGAACCTGGGCTCCATGCCGGCGTCCGCGGCGGCGGCGACGGCGACGGG