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Detailed information on CNT30436608


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XLR1|PIP26_ORYSJ, E-value = 2e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Aegilops tauschiiOryza sativa45.3451.1888.96326forward
CNT30159576Aegilops tauschiiPistacia vera21.1419.1982.24152forward
CNT30289517Aegilops tauschiiTriticum aestivum39.3651.1898.94283forward
CNT30387764Aegilops tauschiiTriticum turgidum39.3631.9198.94283forward
CNT30553402Aegilops tauschiiOryza glaberrima45.3462.3388.96326forward
CNT30228928Aegilops tauschiiAnanas comosus27.5450.7787.88198forward
CNT30653715Aegilops tauschiiRosa chinensis20.4525.2187.07147forward
CNT30214941Aegilops tauschiiHelianthus annuus11.432.1689.0282forward
CNT30680357Aegilops tauschiiTriticum urartu22.6757.3998.77163forward
CNT30596194Aegilops tauschiiOryza meridionalis45.3474.9488.04326forward
CNT30370054Aegilops tauschiiOryza glumipatula45.3462.3388.96326forward
CNT30109688Aegilops tauschiiOryza longistaminata44.0959.8188.96317forward
CNT30331328Aegilops tauschiiDioscorea rotundata24.233.9287.93174forward
CNT30101372Aegilops tauschiiOryza rufipogon45.3443.2488.96326forward
CNT30576241Aegilops tauschiiOryza barthii45.3449.1788.96326forward
CNT30116534Aegilops tauschiiOryza nivara45.3475.4688.96326forward

Expression of CNT30436608

Peptides detected in this lncRNA

>peptide 1 (60 aa)
VALNYWPAGSVAPAAPEGAERLDGRRPEDVLVVRRRRQRSHERADPEDPLHVMFKACQVS*

>peptide 2 (41 aa)
MTAAPRLLAGLMPVPVMGMVASTGTCESRALRLGSVAEKTV*

>peptide 3 (54 aa)
MAAARRMYWWYAAAASAPTNGPTQKIHCMSCSKHAKLVSFFFFLQDQVEEENVR*

Sequence

>CNT30436608
GTTGCATTAAATTATTGGCCGGCCGGCTCAGTTGCTCCGGCTGCTCCGGAAGGAGCCGAGCGCCTTGATGGCCGCCGCCCGGAGGATGTACTGGTGGTAC
GCCGCCGCCGCCAGCGCTCCCACGAACGGGCCGACCCAGAAGATCCACTGCATGTCATGTTCAAAGCATGCCAAGTTAGTTAGCTTCTTCTTCTTCTTGC
AAGATCAGGTAGAAGAAGAAAACGTAAGGTAGAGAGAGGAAGAAGCTTAATTACGTGGTTGTCCCATGCGGCCTTCTTGTTGTAGATGACGGCGGCGCCG
AGGCTCCTGGCGGGGTTGATGCCGGTGCCGGTGATGGGGATGGTGGCGAGCACGGGGACGTGCGAGTCGCGGGCGCTGCGCTTGGGGTCGGTGGCGGAGA
AGACGGTGTAGACGAGCACGAAGATCATGCCGCCGAAGGCCCAGGCGATGCCGAGCACGCCGACGCCGCCGCACGGGTCGGCCGCCGACTGCACCTTGTA
GCCGATGACGGTGGCGACGGTGATGTAGAGGAAGAGCAGCGTGGCGACGAACTCGGCGATGATGGCCCGGTAGAAGGACCACATCCGGAGCTCCCCCATG
TCGAAGAGCGGCGCCGGCGGCGGGTCGGAGTAGTCCTTGTGCGCCGGCGCGGCGTGCTCCGGCTCCTCGCTCACCTCCTTGGCCATGGCTCCTCTCTCTC
TGTCTCTCTCTCTCTTCTC