Detailed information on CNT30436604


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30504332Aegilops tauschiiNicotiana attenuata10.0723.6283.9581forward
CNT30552699Aegilops tauschiiOryza glaberrima16.2933.3388.55131forward
CNT30145515Aegilops tauschiiMedicago truncatula10.4534.2984.5284forward
CNT3062229Aegilops tauschiiArabidopsis lyrata12.8122.3987.38103forward
CNT30227873Aegilops tauschiiAnanas comosus15.820.6588.19127forward
CNT30570969Aegilops tauschiiVitis vinifera9.3327.2790.6775forward
CNT30120694Aegilops tauschiiCitrus clementina16.5454.5181.95133forward

Expression of CNT30436604

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVGGSGSRTRLGSVYCCKISFVCICHVTHKLQECAKIKTSRLISGE*

>peptide 2 (46 aa)
MDEEYHTSDLEPVIWDDIVQHGFNKVILAILRRSIRYTVYSICSCG*

>peptide 3 (30 aa)
MHGGKWRYIRGHPRPSRCCRSQQLPSSLPG*

>peptide 4 (56 aa)
MGANGGTYVVIPGLLVVVDHSSSQAPCRVDAGAGDGDSGQVHHEHREADWQRSQHLN

Sequence

>CNT30436604
GAGGAATTTGAATTAGTATTAATTCCCACCTAATTGCACTCTCAACAAAAACTGTGGGCATGTGTATGTAGAACTAGATAGTGACTAACTTACTCAGGTA
CATTAGTGGTAGCAAAGTTTCTGGCGTGGTTGGATGGTAGGTGGGAGTGGGAGCAGGACGAGATTAGGCAGCGTGTACTGCTGCAAAATTAGTTTTGTTT
GCATATGTCATGTCACACATAAGCTACAAGAGTGTGCAAAAATAAAAACTTCAAGGCTAATCAGTGGGGAGTGACATCGCTTGAGTTTATTAAGTGATCC
TTATCCCGGGTCCTTGCCCAAAATAATCGACCTGCTCAGCGGTTTGATTGCTACTTTTGAACTTATGGACGAGGAATACCACACAAGTGATCTAGAACCA
GTCATTTGGGATGACATAGTGCAGCATGGGTTTAATAAAGTTATCCTGGCTATCTTGCGCCGTTCGATAAGATATACAGTATATTCTATCTGTTCTTGTG
GATGAGGAACACCACACAAGTTCTCTTTGTTTTCTTTTATTTTTACTTAATAGTCTTCGAGGTGATTGTGACCACTGCTTACTGAAATAGTAACTGTGAG
AACAATATTAATAATTAGCAGAGAGATGCATGCATGGGGGCAAATGGCGGTACATACGTGGTCATCCCAGGCCTTCTCGTTGTTGTAGATCACAGCAGCT
CCCAAGCTCCTTGCCGGGTTGATGCCGGTGCCGGTGATGGGGATAGTGGCCAGGTGCACCATGAACACCGCGAAGCCGATTGGCAGAGGAGCCAGCACCT
GAAC