Detailed information on CNT30436477


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520517Aegilops tauschiiSetaria italica69.4168.5188.63211forward
CNT30287058Aegilops tauschiiTriticum aestivum26.9723.5684.1582forward
CNT30220900Aegilops tauschiiHordeum vulgare42.1136.8997.66128forward
CNT30553080Aegilops tauschiiOryza glaberrima38.8242.9190.68118forward
CNT30658727Aegilops tauschiiTriticum dicoccoides46.7120.5283.8142forward
CNT30446776Aegilops tauschiiSaccharum spontaneum40.4640.0786.18123forward
CNT30721394Aegilops tauschiiTriticum spelta40.7946.4487.9124forward

Expression of CNT30436477

Peptides detected in this lncRNA

>peptide 1 (61 aa)
WDWPMECLTARPVALLTSAKAGMPSSSLTVVLKRMSLSQCWVSSLGLTGASSSPPRPGSRS*

>peptide 2 (52 aa)
VGLADGVLDGEAGGLVDEREGRHALLVLDGGAEAHVLEPVLGLVLGVDGGEQ*

Sequence

>CNT30436477
GTGGGACTGGCCGATGGAGTGCTTGACGGCGAGGCCGGTGGCCTTGTTGACGAGCGCGAAGGCCGGCATGCCCTCCTCGTCCTTGACGGTGGTGCTGAAG
CGCATGTCCTTGAGCCAGTGCTGGGTCTCGTCCTTGGGGTTGACGGGGGCGAGCAGTAGTCCTCCGAGGCCCGGCAGTAGATCTTGAAGATCTGGTTGGG
GCCCGACGCCGCCGGCGCCTGGTCCTTGTGGTGGTGCCCGAACCCGAACATCTTGGCGGCGAGGAGAGCGTGTGTGATCGGCTCTGTTGGTTGGGACCTC
GGAG