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Detailed information on CNT30436398


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 4e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671259Aegilops tauschiiSetaria viridis50.9161.6197.62252forward
CNT30221015Aegilops tauschiiHordeum vulgare48.2845.3597.49239forward

Expression of CNT30436398

Peptides detected in this lncRNA

>peptide 1 (67 aa)
QNRTSFIDRNKILQPTEHKTRNTTTHAKAAVNPISHSTHHRGHKTDTAATTLLLPPTEPRNLAPPKP*

>peptide 2 (42 aa)
MSPEMRFTPPLLASLRIAGLVMPWMLSRSTFRCVIGKKRECC*

>peptide 3 (31 aa)
FRTELVSLTATRYYSLLNTRHGTQRRTPKQQ*

Sequence

>CNT30436398
TTCAGAACAGAACTAGTTTCATTGACCGCAACAAGATATTACAGCCTACTGAACACAAGACACGGAACACAACGACGCACGCCAAAGCAGCAGTAAATCC
CATCTCCCACAGCACACATCACAGAGGGCACAAGACAGACACAGCCGCAACCACACTGCTGCTGCCACCAACGGAACCCAGGAACCTAGCCCCGCCGAAG
CCGTAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCGCGGA
TGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCTTCACGCCGCCCCTCCTGGCCAGCCTCCGGATCGC
CGGCTTGGTGATGCCCTGGATGTTGTCGCGGAGCACCTTCCGGTGTGTGATTGGGAAGAAGAGGGAGTGCTGCTGAAGCTTGTGGTGGGATTTGG