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Detailed information on CNT30436341


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N4|40G3_ORYSJ, E-value = 2e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Aegilops tauschiiOryza sativa60.5321.8894.02184forward
CNT30672063Aegilops tauschiiSetaria viridis59.2134.8891.67180forward
CNT30180108Aegilops tauschiiSecale cereale53.9574.8992.07164forward
CNT30289860Aegilops tauschiiTriticum aestivum89.14100100271forward
CNT30221546Aegilops tauschiiHordeum vulgare53.9571.9394.51164forward
CNT30386449Aegilops tauschiiTriticum turgidum59.8736.8492.31182forward
CNT30554471Aegilops tauschiiOryza glaberrima60.5333.3994.02184forward
CNT30251924Aegilops tauschiiAvena sativa60.233.6496.17183forward
CNT30658643Aegilops tauschiiTriticum dicoccoides80.2655.0891.39244forward
CNT30450022Aegilops tauschiiSaccharum spontaneum59.8717.692.31182forward
CNT30680880Aegilops tauschiiTriticum urartu80.2647.291.39244forward
CNT30340854Aegilops tauschiiEragrostis tef46.3861.8494.33141forward
CNT30596591Aegilops tauschiiOryza meridionalis59.2138.2291.67180forward
CNT30370660Aegilops tauschiiOryza glumipatula60.5332.0694.02184forward
CNT30148227Aegilops tauschiiBrachypodium distachyon48.6858.7389.86148forward
CNT30102628Aegilops tauschiiOryza rufipogon60.5314.594.02184forward
CNT30577143Aegilops tauschiiOryza barthii60.5336.2994.02184forward
CNT30496422Aegilops tauschiiDigitaria exilis59.2129.1789.44180forward
CNT30117165Aegilops tauschiiOryza nivara60.5341.0794.02184forward
CNT30604388Aegilops tauschiiOryza punctata51.3246.9993.59156forward
CNT30556699Aegilops tauschiiPanicum hallii59.8730.4991.21182forward
CNT30551356Aegilops tauschiiOryza brachyantha51.6445.3892.36157forward

Expression of CNT30436341

Peptides detected in this lncRNA

>peptide 1 (99 aa)
HIVSSVDTYARMGRYGYVYVDLHAYVHEPCMMHARRALAGSVVRLELPALVVALAPLPEHDLGAVAHAAVVLVAVEGVEVEVDVVHHADAAEALAHVPAL

>peptide 2 (46 aa)
MHDACTARAGWLSSTAGASSVGCRPRTTSRARPRCRRARRRGTCRR*

Sequence

>CNT30436341
TCCACATCGTTTCTTCAGTAGATACGTACGCACGCATGGGTAGGTATGGGTATGTGTATGTCGATCTGCACGCGTACGTGCACGAGCCATGCATGATGCA
TGCACGGCGCGCGCTGGCTGGCTCAGTAGTACGGCTGGAGCTTCCAGCGTTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGACCTCGGTGCCGTCGCG
CACGCCGCCGTGGTACTTGTCGCCGTTGAGGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGGACGCAGCGGAAGCCCTTGCCCACGTCCCTGCTC
TCCG